Wall clock time and date at job start Mon Mar 30 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.39458 * 300.17499 * 9 7 2 11 11 C 1.53184 * 109.39848 * 180.43888 * 9 7 2 12 12 S 1.81814 * 108.67663 * 177.23154 * 11 9 7 13 13 O 1.42102 * 108.70242 * 298.06382 * 12 11 9 14 14 O 1.42098 * 108.70188 * 166.57438 * 12 11 9 15 15 C 1.81812 * 101.01802 * 52.31813 * 12 11 9 16 16 C 1.53187 * 108.67881 * 307.68190 * 15 12 11 17 17 N 1.46463 * 109.89880 * 62.63665 * 16 15 12 18 18 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.60432 * 296.99160 * 11 9 7 20 20 H 1.08998 * 109.59993 * 57.47684 * 11 9 7 21 21 H 1.09000 * 109.60476 * 187.92591 * 15 12 11 22 22 H 1.09003 * 109.74000 * 67.52008 * 15 12 11 23 23 H 1.08996 * 109.39898 * 302.50215 * 16 15 12 24 24 H 1.09000 * 109.32847 * 182.72708 * 16 15 12 25 25 H 1.00902 * 111.00201 * 53.07383 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6229 -2.5545 0.8885 11 6 2.2480 -3.6622 0.0099 12 16 1.3202 -5.2236 0.0929 13 8 0.5796 -5.2496 1.3054 14 8 2.2034 -6.2950 -0.2093 15 6 0.1624 -5.0139 -1.2931 16 6 -0.5588 -3.6721 -1.1312 17 7 0.4092 -2.5749 -1.1967 18 1 -0.4849 -0.8401 0.0004 19 1 2.8455 -3.6398 -0.9014 20 1 2.8997 -3.5774 0.8795 21 1 -0.5668 -5.8241 -1.2862 22 1 0.7104 -5.0232 -2.2353 23 1 -1.0680 -3.6487 -0.1678 24 1 -1.2909 -3.5573 -1.9305 25 1 0.9722 -2.6386 -2.0316 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075119049.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:19 Heat of formation + Delta-G solvation = -71.494452 kcal Electronic energy + Delta-G solvation = -12139.985591 eV Core-core repulsion = 9859.710542 eV Total energy + Delta-G solvation = -2280.275049 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.41975 -36.47604 -35.67665 -32.97057 -30.76419 -28.11289 -24.96645 -22.63879 -21.08714 -18.59711 -17.42172 -16.04771 -15.89084 -15.39871 -14.53632 -14.37587 -13.76646 -13.63105 -12.86533 -12.42450 -12.23003 -11.86730 -11.69583 -11.51059 -11.21295 -10.80599 -10.53838 -10.34662 -10.14746 -9.95101 -8.71025 -8.44388 -7.71108 -6.33611 -4.17979 0.41044 3.02476 3.41987 3.44233 3.60066 3.95872 4.33409 4.50396 4.74889 4.94210 5.11880 5.40410 5.47177 5.59575 5.65576 5.89786 6.19138 6.24791 6.75510 7.70051 7.98927 8.25520 8.42892 8.87293 9.65128 11.06473 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.061164 B = 0.011074 C = 0.010266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.677891 B = 2527.792988 C = 2726.721945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.038 3.962 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.609 4.609 8 H 0.053 0.947 9 C 0.214 3.786 10 H 0.054 0.946 11 C -0.600 4.600 12 S 2.394 3.606 13 O -0.946 6.946 14 O -0.965 6.965 15 C -0.642 4.642 16 C 0.066 3.934 17 N -0.675 5.675 18 H 0.289 0.711 19 H 0.121 0.879 20 H 0.130 0.870 21 H 0.125 0.875 22 H 0.125 0.875 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -6.398 -3.153 7.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.172 4.172 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.649 4.649 8 H 0.071 0.929 9 C 0.106 3.894 10 H 0.071 0.929 11 C -0.735 4.735 12 S 2.580 3.420 13 O -0.943 6.943 14 O -0.962 6.962 15 C -0.774 4.774 16 C -0.066 4.066 17 N -0.305 5.305 18 H 0.101 0.899 19 H 0.140 0.860 20 H 0.148 0.852 21 H 0.144 0.856 22 H 0.143 0.857 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.372 -5.070 -2.323 5.589 hybrid contribution 0.799 -2.027 -0.849 2.339 sum 1.172 -7.097 -3.172 7.861 Atomic orbital electron populations 1.70559 1.06872 1.32709 1.41595 1.25714 0.96575 1.02131 0.92817 0.83553 0.74647 0.75275 0.76720 1.21504 1.21005 1.21625 1.21690 0.93628 0.90180 1.59357 0.92854 1.19247 0.88156 0.92082 0.89870 0.92852 1.30824 1.13541 1.18167 1.10936 1.08557 0.77769 0.78371 0.77323 1.93553 1.71938 1.87147 1.41668 1.93524 1.64482 1.52555 1.85617 1.31026 1.16958 1.09776 1.19661 1.21926 0.96629 0.84079 1.03955 1.60635 1.21798 1.41530 1.06490 0.89882 0.86038 0.85151 0.85618 0.85655 0.89762 0.89847 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.50 55.43 0.75 -24.48 15 2 C 0.04 1.03 5.39 -17.82 -0.10 0.94 15 3 Si 1.07 23.96 29.90 -169.99 -5.08 18.88 15 4 H -0.29 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.29 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.61 -15.77 8.76 -34.44 -0.30 -16.07 15 8 H 0.05 1.37 7.74 -52.48 -0.41 0.96 15 9 C 0.21 4.81 1.76 -69.01 -0.12 4.69 15 10 H 0.05 1.31 7.79 -51.93 -0.40 0.91 15 11 C -0.60 -10.92 5.70 37.25 0.21 -10.71 15 12 S 2.39 40.09 5.35 -107.50 -0.57 39.51 15 13 O -0.95 -19.03 18.10 -57.79 -1.05 -20.07 15 14 O -0.96 -18.17 18.11 -57.79 -1.05 -19.22 15 15 C -0.64 -8.89 6.49 37.25 0.24 -8.65 15 16 C 0.07 1.08 6.41 -3.96 -0.03 1.06 15 17 N -0.67 -13.58 4.86 -108.38 -0.53 -14.11 15 18 H 0.29 8.12 6.39 -40.82 -0.26 7.86 15 19 H 0.12 1.99 8.14 -51.93 -0.42 1.56 15 20 H 0.13 2.32 8.14 -51.93 -0.42 1.90 15 21 H 0.13 1.47 8.14 -51.93 -0.42 1.04 15 22 H 0.13 1.48 8.14 -51.93 -0.42 1.06 15 23 H 0.08 1.46 7.93 -51.93 -0.41 1.04 15 24 H 0.08 1.23 8.14 -51.93 -0.42 0.80 15 25 H 0.34 6.21 8.66 -39.29 -0.34 5.87 15 LS Contribution 224.85 15.07 3.39 3.39 Total: -1.00 -32.57 224.85 -6.96 -39.53 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.73 Total: 5.30 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: -0.09 Total: -28.74 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.22 Total: -38.58 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -2.09 Total: -39.29 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.08 Total: 18.88 kcal Atomic # 16 Polarization: 40.09 SS G_CDS: -0.57 Total: 39.51 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -32.57 -6.96 -39.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075119049.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.960 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds