Wall clock time and date at job start Mon Mar 30 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.39458 * 300.17499 * 9 7 2 11 11 C 1.53184 * 109.39848 * 180.43888 * 9 7 2 12 12 S 1.81814 * 108.67663 * 177.23154 * 11 9 7 13 13 O 1.42102 * 108.70242 * 298.06382 * 12 11 9 14 14 O 1.42098 * 108.70188 * 166.57438 * 12 11 9 15 15 C 1.81812 * 101.01802 * 52.31813 * 12 11 9 16 16 C 1.53187 * 108.67881 * 307.68190 * 15 12 11 17 17 N 1.46463 * 109.89880 * 62.63665 * 16 15 12 18 18 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.60432 * 296.99160 * 11 9 7 20 20 H 1.08998 * 109.59993 * 57.47684 * 11 9 7 21 21 H 1.09000 * 109.60476 * 187.92591 * 15 12 11 22 22 H 1.09003 * 109.74000 * 67.52008 * 15 12 11 23 23 H 1.08996 * 109.39898 * 302.50215 * 16 15 12 24 24 H 1.09000 * 109.32847 * 182.72708 * 16 15 12 25 25 H 1.00902 * 111.00201 * 53.07383 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6229 -2.5545 0.8885 11 6 2.2480 -3.6622 0.0099 12 16 1.3202 -5.2236 0.0929 13 8 0.5796 -5.2496 1.3054 14 8 2.2034 -6.2950 -0.2093 15 6 0.1624 -5.0139 -1.2931 16 6 -0.5588 -3.6721 -1.1312 17 7 0.4092 -2.5749 -1.1967 18 1 -0.4849 -0.8401 0.0004 19 1 2.8455 -3.6398 -0.9014 20 1 2.8997 -3.5774 0.8795 21 1 -0.5668 -5.8241 -1.2862 22 1 0.7104 -5.0232 -2.2353 23 1 -1.0680 -3.6487 -0.1678 24 1 -1.2909 -3.5573 -1.9305 25 1 0.9722 -2.6386 -2.0316 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075119049.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:19 Heat of formation + Delta-G solvation = -98.280670 kcal Electronic energy + Delta-G solvation = -12141.147128 eV Core-core repulsion = 9859.710542 eV Total energy + Delta-G solvation = -2281.436586 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.97027 -37.96798 -37.14900 -34.74585 -32.39598 -29.53326 -26.83864 -24.10517 -22.77364 -20.01285 -19.20361 -17.54684 -17.35386 -16.85042 -16.01051 -15.86591 -15.56490 -15.07650 -14.23675 -14.08160 -13.92075 -13.36131 -13.17214 -13.00011 -12.62455 -12.55409 -12.22574 -11.97194 -11.83177 -11.44408 -10.52219 -10.44190 -9.27705 -8.38365 -6.25886 -0.95002 1.60506 1.67499 1.69007 1.84730 2.61802 2.65088 3.00025 3.18702 3.58874 3.63757 3.93627 4.02827 4.08809 4.35252 4.66457 4.72487 4.93243 5.07749 5.90789 6.16727 6.51413 6.75871 6.81663 7.64501 8.98873 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.061164 B = 0.011074 C = 0.010266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.677891 B = 2527.792988 C = 2726.721945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 1.112 2.888 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.622 4.622 8 H 0.049 0.951 9 C 0.214 3.786 10 H 0.021 0.979 11 C -0.607 4.607 12 S 2.416 3.584 13 O -0.984 6.984 14 O -0.981 6.981 15 C -0.614 4.614 16 C 0.063 3.937 17 N -0.692 5.692 18 H 0.280 0.720 19 H 0.142 0.858 20 H 0.125 0.875 21 H 0.161 0.839 22 H 0.159 0.841 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -7.189 -4.606 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.214 4.214 3 Si 0.936 3.064 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.661 4.661 8 H 0.067 0.933 9 C 0.105 3.895 10 H 0.038 0.962 11 C -0.740 4.740 12 S 2.604 3.396 13 O -0.981 6.981 14 O -0.978 6.978 15 C -0.749 4.749 16 C -0.068 4.068 17 N -0.323 5.323 18 H 0.092 0.908 19 H 0.160 0.840 20 H 0.144 0.856 21 H 0.179 0.821 22 H 0.177 0.823 23 H 0.088 0.912 24 H 0.129 0.871 25 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.603 -5.870 -3.752 6.992 hybrid contribution 0.709 -1.861 -0.431 2.037 sum 1.312 -7.730 -4.182 8.887 Atomic orbital electron populations 1.70659 1.07768 1.32278 1.44439 1.26935 0.96717 1.05506 0.92265 0.82984 0.74218 0.72062 0.77131 1.20772 1.21287 1.19880 1.22088 0.93783 0.91993 1.58275 0.93269 1.18921 0.88547 0.92348 0.89700 0.96152 1.30775 1.13265 1.18064 1.11896 1.07767 0.77418 0.76829 0.77551 1.93505 1.72485 1.87271 1.44865 1.93502 1.65701 1.52601 1.86037 1.30779 1.16297 1.09288 1.18561 1.21971 0.96267 0.84194 1.04347 1.60239 1.22107 1.44186 1.05778 0.90838 0.84021 0.85630 0.82111 0.82307 0.91215 0.87112 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.01 13.50 21.45 0.29 -52.72 15 2 C -0.01 -0.52 5.39 84.65 0.46 -0.07 15 3 Si 1.11 48.24 29.90 68.60 2.05 50.29 15 4 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.29 -12.48 7.11 99.48 0.71 -11.78 15 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 7 C -0.62 -32.37 8.76 25.60 0.22 -32.15 15 8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 15 9 C 0.21 9.60 1.76 44.31 0.08 9.68 15 10 H 0.02 1.05 7.79 -2.39 -0.02 1.03 15 11 C -0.61 -21.62 5.70 72.04 0.41 -21.21 15 12 S 2.42 76.67 5.35 -56.49 -0.30 76.37 15 13 O -0.98 -39.17 18.10 -127.41 -2.31 -41.47 15 14 O -0.98 -34.75 18.11 -127.41 -2.31 -37.06 15 15 C -0.61 -14.47 6.49 72.04 0.47 -14.00 15 16 C 0.06 1.92 6.41 86.45 0.55 2.48 15 17 N -0.69 -27.03 4.86 -496.79 -2.41 -29.44 15 18 H 0.28 16.10 6.39 -92.71 -0.59 15.51 15 19 H 0.14 4.37 8.14 -2.39 -0.02 4.35 15 20 H 0.13 4.50 8.14 -2.39 -0.02 4.48 15 21 H 0.16 2.87 8.14 -2.39 -0.02 2.85 15 22 H 0.16 2.86 8.14 -2.39 -0.02 2.84 15 23 H 0.07 2.34 7.93 -2.39 -0.02 2.32 15 24 H 0.11 2.84 8.14 -2.39 -0.02 2.82 15 25 H 0.35 12.08 8.66 -89.69 -0.78 11.30 15 Total: -1.00 -70.23 224.85 -2.20 -72.43 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.59 Total: 16.87 kcal Atomic # 6 Polarization: -57.45 SS G_CDS: 2.19 Total: -55.26 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.12 Total: -82.16 kcal Atomic # 8 Polarization: -73.92 SS G_CDS: -4.61 Total: -78.53 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.05 Total: 50.29 kcal Atomic # 16 Polarization: 76.67 SS G_CDS: -0.30 Total: 76.37 kcal Total: -70.23 -2.20 -72.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075119049.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.847 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds