Wall clock time and date at job start Mon Mar 30 2020 02:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 119.99707 * 2 1 4 4 H 1.48499 * 109.47107 * 269.99690 * 3 2 1 5 5 H 1.48498 * 109.47466 * 29.99784 * 3 2 1 6 6 H 1.48500 * 109.47178 * 149.99966 * 3 2 1 7 7 C 1.40156 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.41156 * 119.99967 * 0.02562 * 7 2 1 10 10 N 1.31927 * 126.53346 * 359.96951 * 9 7 2 11 11 O 1.41321 * 109.37238 * 180.02562 * 10 9 7 12 12 C 1.34989 * 109.71735 * 359.97438 * 11 10 9 13 13 C 1.39066 * 132.90835 * 179.97438 * 12 11 10 14 14 C 1.37762 * 120.02222 * 180.26026 * 13 12 11 15 15 C 1.39142 * 120.49379 * 359.42060 * 14 13 12 16 16 O 1.35948 * 119.92161 * 180.31257 * 15 14 13 17 17 C 1.38323 * 120.16341 * 0.61376 * 15 14 13 18 18 C 1.39228 * 119.67581 * 359.68117 * 17 15 14 19 19 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.98513 * 359.97438 * 13 12 11 21 21 H 1.08000 * 119.75410 * 179.72020 * 14 13 12 22 22 H 0.96696 * 114.00228 * 270.29823 * 16 15 14 23 23 H 1.07999 * 120.15784 * 179.70129 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5382 1.4403 0.7000 7 6 2.0075 -1.2137 0.0005 8 1 3.0876 -1.2137 0.0010 9 6 1.3018 -2.4362 0.0005 10 7 -0.0089 -2.5864 0.0006 11 8 -0.3228 -3.9643 0.0012 12 6 0.8150 -4.6907 0.0009 13 6 1.0650 -6.0587 0.0016 14 6 2.3622 -6.5223 0.0065 15 6 3.4306 -5.6310 -0.0015 16 8 4.7062 -6.1013 -0.0031 17 6 3.1982 -4.2674 -0.0016 18 6 1.8899 -3.7912 -0.0004 19 1 -0.4850 0.8400 -0.0004 20 1 0.2418 -6.7578 0.0031 21 1 2.5514 -7.5856 0.0116 22 1 5.0764 -6.2371 0.8798 23 1 4.0276 -3.5756 -0.0029 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075564133.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:11 Heat of formation + Delta-G solvation = -22.563711 kcal Electronic energy + Delta-G solvation = -12463.369818 eV Core-core repulsion = 10049.772614 eV Total energy + Delta-G solvation = -2413.597204 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.85795 -39.48370 -36.51532 -36.12631 -33.58396 -30.95062 -29.66684 -28.34571 -24.03318 -23.22255 -22.27873 -19.35925 -19.12325 -17.64611 -17.07382 -16.72121 -16.35701 -16.01985 -15.07136 -14.97010 -14.52090 -13.77341 -13.30700 -13.13444 -12.93503 -12.54598 -12.44937 -12.00223 -11.94161 -11.50547 -11.11075 -10.84883 -9.64311 -9.15765 -8.73128 -6.97089 0.05492 0.36727 1.31687 1.38643 1.56849 1.90979 2.16205 2.55410 2.63617 3.21341 3.33710 3.83481 4.01386 4.18933 4.26075 4.59284 4.86126 5.02839 5.09309 5.25261 5.38386 5.44474 5.76310 6.05542 6.40404 6.59626 6.94115 7.46196 8.25897 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.044037 B = 0.010351 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.683043 B = 2704.443603 C = 3327.772039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.016 3.984 3 Si 1.011 2.989 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.244 1.244 7 C -0.444 4.444 8 H 0.111 0.889 9 C 0.182 3.818 10 N -0.409 5.409 11 O -0.187 6.187 12 C 0.043 3.957 13 C -0.132 4.132 14 C -0.087 4.087 15 C 0.061 3.939 16 O -0.496 6.496 17 C -0.082 4.082 18 C -0.193 4.193 19 H 0.292 0.708 20 H 0.156 0.844 21 H 0.178 0.822 22 H 0.407 0.593 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.741 -6.237 1.772 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.204 4.204 3 Si 0.828 3.172 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.167 1.167 7 C -0.483 4.483 8 H 0.129 0.871 9 C 0.027 3.973 10 N -0.185 5.185 11 O -0.183 6.183 12 C -0.011 4.011 13 C -0.152 4.152 14 C -0.106 4.106 15 C 0.016 3.984 16 O -0.308 6.308 17 C -0.102 4.102 18 C -0.197 4.197 19 H 0.103 0.897 20 H 0.173 0.827 21 H 0.195 0.805 22 H 0.265 0.735 23 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.236 -5.796 1.176 9.346 hybrid contribution 0.538 0.533 0.458 0.885 sum 7.775 -5.263 1.633 9.529 Atomic orbital electron populations 1.69932 1.09703 1.31172 1.31003 1.27289 0.95800 1.05710 0.91578 0.84782 0.78853 0.73705 0.79837 1.18301 1.19182 1.16685 1.19434 0.95417 0.87927 1.45515 0.87130 1.21680 0.90802 0.92898 0.91898 1.81250 1.13675 0.81106 1.42510 1.88940 1.27980 1.18377 1.83009 1.21091 0.87706 0.95030 0.97291 1.20205 0.98828 0.89277 1.06891 1.21478 0.89735 1.01521 0.97853 1.18057 0.85208 0.89646 1.05509 1.84807 1.24409 1.86231 1.35326 1.21013 0.94567 0.96126 0.98501 1.21247 0.95490 0.92449 1.10469 0.89723 0.82652 0.80516 0.73530 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.60 11.97 21.86 0.26 -44.34 14 2 C 0.02 0.83 5.50 85.33 0.47 1.30 14 3 Si 1.01 37.26 29.56 68.60 2.03 39.29 14 4 H -0.26 -9.15 7.11 99.48 0.71 -8.44 14 5 H -0.27 -9.46 7.11 99.48 0.71 -8.76 14 6 H -0.24 -8.31 7.11 99.48 0.71 -7.60 14 7 C -0.44 -24.11 9.44 23.45 0.22 -23.89 14 8 H 0.11 5.33 7.85 -2.91 -0.02 5.31 14 9 C 0.18 10.67 6.95 42.35 0.29 10.96 14 10 N -0.41 -25.90 11.13 -48.34 -0.54 -26.44 14 11 O -0.19 -10.90 12.05 28.22 0.34 -10.56 14 12 C 0.04 2.10 7.45 22.94 0.17 2.27 14 13 C -0.13 -4.76 10.06 22.36 0.22 -4.54 14 14 C -0.09 -2.55 9.96 22.37 0.22 -2.33 14 15 C 0.06 1.95 6.70 22.51 0.15 2.10 14 16 O -0.50 -12.43 13.50 -92.96 -1.25 -13.69 14 17 C -0.08 -3.28 10.03 22.53 0.23 -3.05 14 18 C -0.19 -9.68 6.30 -20.07 -0.13 -9.80 14 19 H 0.29 14.68 8.29 -92.71 -0.77 13.91 14 20 H 0.16 4.57 8.06 -2.91 -0.02 4.55 14 21 H 0.18 3.53 8.06 -2.91 -0.02 3.51 14 22 H 0.41 5.78 9.06 -74.06 -0.67 5.11 14 23 H 0.14 5.03 8.06 -2.91 -0.02 5.00 14 Total: -1.00 -73.41 221.28 3.28 -70.13 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.59 Total: 12.59 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 1.85 Total: -26.97 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -0.28 Total: -70.78 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.91 Total: -24.25 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Total: -73.41 3.28 -70.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075564133.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.565 kcal (2) G-P(sol) polarization free energy of solvation -73.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds