Wall clock time and date at job start Mon Mar 30 2020 02:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 119.99846 * 2 1 4 4 H 1.48505 * 109.46906 * 239.99856 * 3 2 1 5 5 H 1.48495 * 109.47386 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47478 * 120.00217 * 3 2 1 7 7 C 1.38907 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99839 * 160.93267 * 7 2 1 9 9 N 1.37256 * 119.99947 * 340.93700 * 7 2 1 10 10 C 1.34770 * 123.75241 * 149.11250 * 9 7 2 11 11 O 1.21256 * 126.61676 * 0.02562 * 10 9 7 12 12 C 1.51496 * 106.93516 * 179.97438 * 10 9 7 13 13 C 1.50844 * 104.04014 * 0.11714 * 12 10 9 14 14 C 1.37488 * 134.10206 * 179.97438 * 13 12 10 15 15 N 1.32756 * 118.77396 * 179.97438 * 14 13 12 16 16 C 1.31835 * 120.63155 * 0.02562 * 15 14 13 17 17 N 1.31641 * 122.31238 * 359.97438 * 16 15 14 18 18 C 1.33311 * 120.70390 * 359.97438 * 17 16 15 19 19 H 0.96996 * 120.00010 * 359.97438 * 1 2 3 20 20 H 1.09006 * 110.53794 * 241.44564 * 12 10 9 21 21 H 1.08997 * 110.54549 * 118.80102 * 12 10 9 22 22 H 1.08000 * 120.61453 * 359.95284 * 14 13 12 23 23 H 1.07999 * 118.83972 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0086 -1.2030 0.0005 8 1 3.0441 -1.2288 -0.3050 9 7 1.3788 -2.3589 0.3893 10 6 1.6824 -3.5777 -0.0991 11 8 2.5293 -3.8343 -0.9281 12 6 0.7642 -4.5689 0.5861 13 6 -0.0743 -3.7161 1.5053 14 6 -1.0861 -3.9805 2.3979 15 7 -1.6269 -2.9704 3.0685 16 6 -1.2022 -1.7364 2.8818 17 7 -0.2364 -1.4449 2.0363 18 6 0.3585 -2.4032 1.3257 19 1 -0.4850 0.8400 0.0004 20 1 1.3429 -5.2936 1.1589 21 1 0.1348 -5.0760 -0.1452 22 1 -1.4347 -4.9912 2.5505 23 1 -1.6630 -0.9365 3.4424 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082399517.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:47 Heat of formation + Delta-G solvation = 18.882956 kcal Electronic energy + Delta-G solvation = -13001.654905 eV Core-core repulsion = 10622.147714 eV Total energy + Delta-G solvation = -2379.507191 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.65452 -40.21933 -37.42273 -35.26431 -33.89310 -32.51342 -29.40816 -27.20343 -24.75597 -23.74969 -21.79257 -20.31357 -18.32929 -17.75474 -17.33780 -16.83685 -16.26802 -15.73558 -15.04755 -14.94726 -14.69199 -14.14710 -13.90619 -13.53161 -12.99891 -12.91028 -12.29751 -12.09940 -11.66487 -11.23098 -10.89741 -10.44216 -9.79813 -9.40962 -8.48282 -6.30237 0.09597 0.43570 1.34235 1.39270 1.48875 1.74754 2.10122 2.45761 2.93503 3.28015 3.30366 3.48396 3.68693 3.81068 4.01025 4.58293 4.67256 4.82080 4.92802 5.27291 5.53333 5.78968 6.08876 6.33013 6.70020 7.02242 7.41831 7.65899 8.54631 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.032107 B = 0.016511 C = 0.011386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.878915 B = 1695.417108 C = 2458.558457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.028 3.972 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.410 4.410 8 H 0.086 0.914 9 N -0.384 5.384 10 C 0.471 3.529 11 O -0.564 6.564 12 C -0.078 4.078 13 C -0.279 4.279 14 C 0.189 3.811 15 N -0.561 5.561 16 C 0.301 3.699 17 N -0.522 5.522 18 C 0.379 3.621 19 H 0.278 0.722 20 H 0.151 0.849 21 H 0.144 0.856 22 H 0.210 0.790 23 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -4.884 5.394 8.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.183 4.183 3 Si 0.816 3.184 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.536 4.536 8 H 0.104 0.896 9 N -0.092 5.092 10 C 0.263 3.737 11 O -0.445 6.445 12 C -0.117 4.117 13 C -0.288 4.288 14 C 0.026 3.974 15 N -0.280 5.280 16 C 0.011 3.989 17 N -0.243 5.243 18 C 0.140 3.860 19 H 0.087 0.913 20 H 0.168 0.832 21 H 0.162 0.838 22 H 0.226 0.774 23 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.534 -4.094 5.332 7.595 hybrid contribution 0.847 0.631 -0.799 1.325 sum -2.687 -3.463 4.533 6.305 Atomic orbital electron populations 1.69898 1.07586 1.29494 1.39509 1.26092 0.95930 1.02705 0.93558 0.85025 0.78098 0.76255 0.79048 1.19364 1.19373 1.19356 1.19560 0.96747 0.85352 1.51972 0.89596 1.41795 1.28936 1.08407 1.30056 1.21528 0.85352 0.84478 0.82362 1.90565 1.36823 1.82118 1.34963 1.20805 0.96191 0.96672 0.98061 1.21566 1.05198 0.95236 1.06799 1.22703 0.87571 1.00179 0.86955 1.68701 1.30559 1.00907 1.27828 1.25174 0.88966 0.93964 0.90751 1.67736 1.11437 1.37130 1.07952 1.18946 0.89138 0.90439 0.87474 0.91259 0.83187 0.83848 0.77362 0.77406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.03 10.86 21.65 0.24 -45.79 14 2 C 0.03 1.51 4.96 84.92 0.42 1.93 14 3 Si 0.99 42.82 29.59 68.60 2.03 44.85 14 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 14 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 14 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 14 7 C -0.41 -23.61 9.59 84.00 0.81 -22.81 14 8 H 0.09 5.05 7.90 -2.91 -0.02 5.03 14 9 N -0.38 -20.49 2.80 -463.20 -1.30 -21.79 14 10 C 0.47 22.62 8.19 87.91 0.72 23.34 14 11 O -0.56 -30.21 17.77 -2.96 -0.05 -30.26 14 12 C -0.08 -2.56 6.87 29.40 0.20 -2.36 14 13 C -0.28 -10.29 6.41 -19.72 -0.13 -10.41 14 14 C 0.19 5.73 11.29 84.38 0.95 6.69 14 15 N -0.56 -19.18 10.47 -200.71 -2.10 -21.28 14 16 C 0.30 11.49 12.25 180.92 2.22 13.70 14 17 N -0.52 -24.77 8.04 -197.61 -1.59 -26.36 14 18 C 0.38 18.27 6.82 133.01 0.91 19.17 14 19 H 0.28 14.38 8.31 -92.71 -0.77 13.61 14 20 H 0.15 3.79 8.14 -2.38 -0.02 3.77 14 21 H 0.14 3.88 8.14 -2.39 -0.02 3.86 14 22 H 0.21 3.99 8.06 -2.91 -0.02 3.97 14 23 H 0.21 6.44 8.06 -2.91 -0.02 6.42 14 Total: -1.00 -70.84 215.84 4.57 -66.28 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.24 Total: 5.10 kcal Atomic # 6 Polarization: 23.16 SS G_CDS: 6.10 Total: 29.26 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.75 Total: -115.22 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -70.84 4.57 -66.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082399517.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.162 kcal (2) G-P(sol) polarization free energy of solvation -70.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds