Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47285 * 2 1 4 4 H 1.08998 * 109.47107 * 305.00427 * 3 2 1 5 5 C 1.53002 * 109.46980 * 64.99821 * 3 2 1 6 6 C 1.50695 * 109.47377 * 184.99866 * 3 2 1 7 7 C 1.38628 * 119.75321 * 299.73134 * 6 3 2 8 8 C 1.37618 * 120.24952 * 179.72262 * 7 6 3 9 9 C 1.40715 * 119.74632 * 0.52448 * 8 7 6 10 10 C 1.41387 * 120.24704 * 179.72850 * 9 8 7 11 11 H 1.08002 * 120.00299 * 204.40884 * 10 9 8 12 12 C 1.39946 * 120.00198 * 24.40197 * 10 9 8 13 13 N 1.30829 * 119.99679 * 17.84998 * 12 10 9 14 14 Si 1.86802 * 120.00304 * 197.84664 * 12 10 9 15 15 H 1.48497 * 109.46752 * 60.00143 * 14 12 10 16 16 H 1.48503 * 109.47047 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46999 * 300.00416 * 14 12 10 18 18 C 1.40718 * 119.50917 * 359.74954 * 9 8 7 19 19 C 1.37622 * 119.74330 * 359.97438 * 18 9 8 20 20 H 1.09005 * 109.47289 * 299.99773 * 1 2 3 21 21 H 1.08995 * 109.47699 * 60.00002 * 1 2 3 22 22 H 1.09008 * 109.47447 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47219 * 240.00144 * 2 1 3 24 24 H 1.09006 * 109.47265 * 119.99958 * 2 1 3 25 25 H 1.09005 * 109.47543 * 300.00445 * 5 3 2 26 26 H 1.09001 * 109.47190 * 60.00232 * 5 3 2 27 27 H 1.08996 * 109.47248 * 180.02562 * 5 3 2 28 28 H 1.08002 * 119.87408 * 359.97266 * 7 6 3 29 29 H 1.08002 * 120.13223 * 180.27285 * 8 7 6 30 30 H 0.97000 * 119.99471 * 179.97438 * 13 12 10 31 31 H 1.08000 * 120.12741 * 179.97438 * 18 9 8 32 32 H 1.08001 * 119.87058 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5418 1.4443 -0.1238 7 6 4.3126 0.8182 0.8435 8 6 5.6847 0.8087 0.7376 9 6 6.3053 1.4474 -0.3519 10 6 7.7143 1.4491 -0.4682 11 1 8.2087 2.2256 -1.0330 12 6 8.4686 0.4446 0.1488 13 7 7.8921 -0.6673 0.5269 14 14 10.2984 0.6914 0.4323 15 1 10.5094 1.8804 1.2965 16 1 10.8629 -0.5107 1.0969 17 1 10.9776 0.9004 -0.8716 18 6 5.5131 2.0847 -1.3248 19 6 4.1424 2.0766 -1.2015 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.5488 2.1252 1.3970 26 1 2.0698 1.5875 2.1492 27 1 1.9981 3.1543 1.3072 28 1 3.8343 0.3325 1.6812 29 1 6.2831 0.3165 1.4900 30 1 8.4150 -1.3637 0.9542 31 1 5.9789 2.5782 -2.1649 32 1 3.5324 2.5648 -1.9472 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082529288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = -25.850672 kcal Electronic energy + Delta-G solvation = -12770.507973 eV Core-core repulsion = 10693.860336 eV Total energy + Delta-G solvation = -2076.647637 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81144 -37.08025 -35.11028 -31.81569 -31.14486 -29.86820 -27.17422 -24.94441 -23.06496 -22.44916 -20.37295 -19.20695 -17.26845 -16.35150 -15.91944 -15.64758 -14.96961 -14.71645 -14.32462 -13.89638 -13.68846 -13.63132 -13.02266 -12.84930 -12.76319 -12.60563 -12.36472 -12.28233 -11.84806 -11.58364 -11.46714 -11.19543 -10.97834 -10.92878 -9.32861 -9.14868 -8.62052 -6.30981 0.99738 1.15648 1.36904 1.48428 1.54337 2.20927 2.73668 3.73649 4.05171 4.14294 4.33431 4.52379 4.55264 4.69681 4.73559 4.79731 4.91864 5.04702 5.14117 5.14853 5.23550 5.25568 5.27571 5.37432 5.50316 5.59130 5.62604 5.73961 6.04944 6.12152 6.30568 6.41688 6.72737 6.96096 7.06742 8.34938 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.062657 B = 0.007521 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.770762 B = 3721.975434 C = 3888.909467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.030 4.030 4 H 0.071 0.929 5 C -0.136 4.136 6 C -0.191 4.191 7 C -0.098 4.098 8 C -0.189 4.189 9 C 0.072 3.928 10 C -0.506 4.506 11 H 0.072 0.928 12 C 0.034 3.966 13 N -0.829 5.829 14 Si 0.983 3.017 15 H -0.261 1.261 16 H -0.267 1.267 17 H -0.260 1.260 18 C -0.243 4.243 19 C -0.097 4.097 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.287 0.713 31 H 0.093 0.907 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 1.344 1.231 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.048 4.048 4 H 0.089 0.911 5 C -0.193 4.193 6 C -0.192 4.192 7 C -0.116 4.116 8 C -0.209 4.209 9 C 0.070 3.930 10 C -0.536 4.536 11 H 0.091 0.909 12 C -0.180 4.180 13 N -0.455 5.455 14 Si 0.803 3.197 15 H -0.186 1.186 16 H -0.191 1.191 17 H -0.184 1.184 18 C -0.263 4.263 19 C -0.115 4.115 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.101 1.104 1.328 8.283 hybrid contribution 1.188 -0.120 0.012 1.195 sum -6.913 0.984 1.340 7.110 Atomic orbital electron populations 1.21792 0.94056 1.01964 1.02394 1.21544 0.96775 0.95920 1.00870 1.19886 0.90094 0.96270 0.98593 0.91081 1.21832 1.01349 0.99706 0.96407 1.19591 0.95462 1.06327 0.97856 1.20696 0.93253 0.99297 0.98350 1.21295 0.94176 1.06009 0.99412 1.17972 0.93925 0.90524 0.90593 1.19787 0.92226 1.10517 1.31057 0.90943 1.26759 1.05873 0.93097 0.92277 1.69886 1.40505 1.04665 1.30465 0.85256 0.75884 0.78926 0.79629 1.18555 1.19093 1.18380 1.21174 0.94204 1.10467 1.00448 1.20791 0.93891 0.99247 0.97560 0.91624 0.92280 0.92314 0.93823 0.93122 0.90631 0.93641 0.93669 0.87924 0.88398 0.90250 0.88828 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.67 71.98 0.70 -2.51 16 2 C -0.11 -3.39 5.14 30.59 0.16 -3.23 16 3 C -0.03 -0.98 2.56 -11.54 -0.03 -1.01 16 4 H 0.07 2.15 7.86 -2.39 -0.02 2.13 16 5 C -0.14 -3.87 8.76 71.98 0.63 -3.24 16 6 C -0.19 -8.18 4.81 -19.68 -0.09 -8.27 16 7 C -0.10 -4.62 8.72 22.22 0.19 -4.42 16 8 C -0.19 -10.37 8.70 22.73 0.20 -10.17 16 9 C 0.07 4.07 5.57 -21.29 -0.12 3.95 16 10 C -0.51 -28.52 9.05 23.46 0.21 -28.31 16 11 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 12 C 0.03 1.79 5.14 85.26 0.44 2.22 16 13 N -0.83 -44.96 10.95 21.83 0.24 -44.72 16 14 Si 0.98 39.45 29.60 68.60 2.03 41.48 16 15 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 16 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 18 C -0.24 -12.50 9.80 22.73 0.22 -12.27 16 19 C -0.10 -4.36 9.64 22.22 0.21 -4.14 16 20 H 0.06 1.30 6.57 -2.38 -0.02 1.28 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.58 7.56 -2.38 -0.02 1.56 16 25 H 0.07 1.70 6.57 -2.38 -0.02 1.68 16 26 H 0.04 1.35 7.35 -2.39 -0.02 1.33 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.10 4.39 7.12 -2.91 -0.02 4.37 16 29 H 0.10 5.61 6.16 -2.91 -0.02 5.59 16 30 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 31 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 32 H 0.12 4.41 7.93 -2.91 -0.02 4.39 16 Total: -1.00 -59.83 263.37 6.07 -53.76 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 1.08 Total: 20.89 kcal Atomic # 6 Polarization: -74.13 SS G_CDS: 2.72 Total: -71.41 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.24 Total: -44.72 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -59.83 6.07 -53.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.912 kcal (2) G-P(sol) polarization free energy of solvation -59.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds