Wall clock time and date at job start Mon Mar 30 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46956 * 2 1 4 4 H 1.08997 * 109.47445 * 55.00262 * 3 2 1 5 5 C 1.53005 * 109.47102 * 295.00129 * 3 2 1 6 6 C 1.50705 * 109.47135 * 175.00459 * 3 2 1 7 7 C 1.38635 * 119.74946 * 59.72416 * 6 3 2 8 8 C 1.37615 * 120.24625 * 179.72519 * 7 6 3 9 9 C 1.40720 * 119.74141 * 0.52618 * 8 7 6 10 10 C 1.41401 * 120.23962 * 179.72746 * 9 8 7 11 11 H 1.08005 * 119.99640 * 204.39975 * 10 9 8 12 12 C 1.39939 * 120.00647 * 24.40103 * 10 9 8 13 13 N 1.30834 * 119.99357 * 17.85600 * 12 10 9 14 14 Si 1.86797 * 120.00590 * 197.85895 * 12 10 9 15 15 H 1.48493 * 109.46963 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47090 * 119.99814 * 14 12 10 17 17 H 1.48501 * 109.47137 * 239.99781 * 14 12 10 18 18 C 1.40712 * 119.51617 * 359.74937 * 9 8 7 19 19 C 1.37620 * 119.74395 * 0.02562 * 18 9 8 20 20 H 1.09007 * 109.47675 * 59.99752 * 1 2 3 21 21 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47251 * 300.00092 * 1 2 3 23 23 H 1.09001 * 109.47094 * 240.00440 * 2 1 3 24 24 H 1.08995 * 109.47221 * 120.00259 * 2 1 3 25 25 H 1.08998 * 109.46980 * 299.99810 * 5 3 2 26 26 H 1.08997 * 109.47402 * 60.00450 * 5 3 2 27 27 H 1.09003 * 109.47024 * 180.02562 * 5 3 2 28 28 H 1.07994 * 119.87495 * 359.97438 * 7 6 3 29 29 H 1.07998 * 120.13341 * 180.27845 * 8 7 6 30 30 H 0.97006 * 119.99548 * 179.97438 * 13 12 10 31 31 H 1.08001 * 120.12711 * 179.97438 * 18 9 8 32 32 H 1.07997 * 119.87679 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5419 1.4443 0.1237 7 6 4.3121 0.8084 -0.8377 8 6 5.6846 0.8087 -0.7378 9 6 6.3052 1.4481 0.3513 10 6 7.7145 1.4498 0.4674 11 1 8.1763 1.5691 1.4364 12 6 8.5108 1.2970 -0.6731 13 7 7.9994 1.5006 -1.8600 14 14 10.3038 0.8021 -0.5011 15 1 10.6351 0.6340 0.9367 16 1 10.5345 -0.4789 -1.2158 17 1 11.1673 1.8585 -1.0873 18 6 5.5132 2.0854 1.3242 19 6 4.1425 2.0765 1.2015 20 1 -0.3635 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.0697 1.5876 -2.1492 26 1 0.5488 2.1253 -1.3969 27 1 1.9988 3.1541 -1.3076 28 1 3.8334 0.3145 -1.6702 29 1 6.2831 0.3166 -1.4902 30 1 8.5515 1.3951 -2.6506 31 1 5.9791 2.5788 2.1644 32 1 3.5325 2.5653 1.9467 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082529289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:34 Heat of formation + Delta-G solvation = -13.114085 kcal Electronic energy + Delta-G solvation = -12766.666887 eV Core-core repulsion = 10690.571550 eV Total energy + Delta-G solvation = -2076.095338 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.03784 -35.48846 -33.29451 -30.20606 -29.22754 -28.35881 -25.45154 -23.50832 -21.27393 -20.67914 -18.81378 -17.24998 -15.41982 -14.73774 -14.53948 -13.83929 -13.44125 -13.11608 -12.75113 -12.31898 -12.04227 -11.84651 -11.64587 -11.37517 -11.20539 -11.08399 -10.83514 -10.53361 -10.22433 -10.11198 -10.05212 -9.42511 -9.24789 -9.04670 -7.39099 -7.22130 -6.71529 -4.29262 2.79822 3.08946 3.11928 3.14870 3.23615 3.96353 4.64357 5.33638 5.41893 5.51944 5.71341 5.84752 5.95475 6.06342 6.18355 6.29330 6.34088 6.39221 6.45062 6.51606 6.62808 6.79885 6.86893 7.02441 7.12914 7.36155 7.43560 7.66967 7.94555 8.10686 8.19872 8.35604 8.69585 8.94947 9.03488 10.23195 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.063991 B = 0.007446 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.455886 B = 3759.434031 C = 3892.822489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.030 4.030 4 H 0.057 0.943 5 C -0.140 4.140 6 C -0.202 4.202 7 C -0.095 4.095 8 C -0.164 4.164 9 C 0.107 3.893 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.796 5.796 14 Si 0.906 3.094 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.275 1.275 18 C -0.226 4.226 19 C -0.091 4.091 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.279 0.721 31 H 0.090 0.910 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 -1.649 0.605 7.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.048 4.048 4 H 0.076 0.924 5 C -0.197 4.197 6 C -0.204 4.204 7 C -0.113 4.113 8 C -0.183 4.183 9 C 0.104 3.896 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.422 5.422 14 Si 0.730 3.270 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.201 1.201 18 C -0.246 4.246 19 C -0.109 4.109 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.834 -1.636 0.353 7.036 hybrid contribution 0.905 -0.130 -0.057 0.916 sum -5.929 -1.766 0.296 6.194 Atomic orbital electron populations 1.21856 0.97017 1.00696 1.01367 1.21587 0.94219 0.97490 1.01869 1.19797 0.93463 0.94646 0.96908 0.92446 1.21875 0.99239 1.00613 0.97979 1.19051 0.92737 1.09452 0.99113 1.20470 0.94119 0.99665 0.97080 1.21315 0.92729 1.03227 1.01062 1.17623 0.93140 0.88066 0.90728 1.19600 0.91201 1.44374 0.94280 0.90565 1.25895 1.00995 0.92507 0.94748 1.69850 1.38171 1.35105 0.99027 0.86303 0.81995 0.78935 0.79718 1.18451 1.19756 1.20063 1.20953 0.93063 1.07681 1.02858 1.20409 0.94459 0.99482 0.96568 0.92850 0.93522 0.93226 0.92309 0.92322 0.92967 0.93783 0.93140 0.89671 0.86578 0.91058 0.89215 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 37.16 0.36 -1.58 16 2 C -0.11 -1.80 5.14 -26.73 -0.14 -1.94 16 3 C -0.03 -0.52 2.56 -91.77 -0.23 -0.76 16 4 H 0.06 0.98 7.86 -51.93 -0.41 0.57 16 5 C -0.14 -2.27 8.76 37.16 0.33 -1.94 16 6 C -0.20 -4.44 4.81 -104.33 -0.50 -4.94 16 7 C -0.09 -2.24 8.72 -39.66 -0.35 -2.58 16 8 C -0.16 -4.34 8.70 -38.87 -0.34 -4.68 16 9 C 0.11 2.91 5.58 -106.82 -0.60 2.32 16 10 C -0.46 -12.61 9.05 -37.74 -0.34 -12.95 16 11 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 12 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 13 N -0.80 -20.97 10.95 55.55 0.61 -20.36 16 14 Si 0.91 18.96 29.60 -169.99 -5.03 13.93 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 18 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 19 C -0.09 -2.09 9.64 -39.66 -0.38 -2.47 16 20 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.87 7.38 -51.93 -0.38 0.48 16 26 H 0.04 0.60 6.56 -51.93 -0.34 0.26 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.83 7.12 -52.49 -0.37 1.46 16 29 H 0.12 3.17 6.15 -52.49 -0.32 2.85 16 30 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 31 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.08 1.72 7.93 -52.49 -0.42 1.31 16 LS Contribution 263.37 15.07 3.97 3.97 Total: -1.00 -27.27 263.37 -7.76 -35.03 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.64 Total: 3.20 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: -2.66 Total: -35.76 kcal Atomic # 7 Polarization: -20.97 SS G_CDS: 0.61 Total: -20.36 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.27 -7.76 -35.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.912 kcal (2) G-P(sol) polarization free energy of solvation -27.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds