Wall clock time and date at job start Mon Mar 30 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46956 * 2 1 4 4 H 1.08997 * 109.47445 * 55.00262 * 3 2 1 5 5 C 1.53005 * 109.47102 * 295.00129 * 3 2 1 6 6 C 1.50705 * 109.47135 * 175.00459 * 3 2 1 7 7 C 1.38635 * 119.74946 * 59.72416 * 6 3 2 8 8 C 1.37615 * 120.24625 * 179.72519 * 7 6 3 9 9 C 1.40720 * 119.74141 * 0.52618 * 8 7 6 10 10 C 1.41401 * 120.23962 * 179.72746 * 9 8 7 11 11 H 1.08005 * 119.99640 * 204.39975 * 10 9 8 12 12 C 1.39939 * 120.00647 * 24.40103 * 10 9 8 13 13 N 1.30834 * 119.99357 * 17.85600 * 12 10 9 14 14 Si 1.86797 * 120.00590 * 197.85895 * 12 10 9 15 15 H 1.48493 * 109.46963 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47090 * 119.99814 * 14 12 10 17 17 H 1.48501 * 109.47137 * 239.99781 * 14 12 10 18 18 C 1.40712 * 119.51617 * 359.74937 * 9 8 7 19 19 C 1.37620 * 119.74395 * 0.02562 * 18 9 8 20 20 H 1.09007 * 109.47675 * 59.99752 * 1 2 3 21 21 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47251 * 300.00092 * 1 2 3 23 23 H 1.09001 * 109.47094 * 240.00440 * 2 1 3 24 24 H 1.08995 * 109.47221 * 120.00259 * 2 1 3 25 25 H 1.08998 * 109.46980 * 299.99810 * 5 3 2 26 26 H 1.08997 * 109.47402 * 60.00450 * 5 3 2 27 27 H 1.09003 * 109.47024 * 180.02562 * 5 3 2 28 28 H 1.07994 * 119.87495 * 359.97438 * 7 6 3 29 29 H 1.07998 * 120.13341 * 180.27845 * 8 7 6 30 30 H 0.97006 * 119.99548 * 179.97438 * 13 12 10 31 31 H 1.08001 * 120.12711 * 179.97438 * 18 9 8 32 32 H 1.07997 * 119.87679 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5419 1.4443 0.1237 7 6 4.3121 0.8084 -0.8377 8 6 5.6846 0.8087 -0.7378 9 6 6.3052 1.4481 0.3513 10 6 7.7145 1.4498 0.4674 11 1 8.1763 1.5691 1.4364 12 6 8.5108 1.2970 -0.6731 13 7 7.9994 1.5006 -1.8600 14 14 10.3038 0.8021 -0.5011 15 1 10.6351 0.6340 0.9367 16 1 10.5345 -0.4789 -1.2158 17 1 11.1673 1.8585 -1.0873 18 6 5.5132 2.0854 1.3242 19 6 4.1425 2.0765 1.2015 20 1 -0.3635 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.0697 1.5876 -2.1492 26 1 0.5488 2.1253 -1.3969 27 1 1.9988 3.1541 -1.3076 28 1 3.8334 0.3145 -1.6702 29 1 6.2831 0.3166 -1.4902 30 1 8.5515 1.3951 -2.6506 31 1 5.9791 2.5788 2.1644 32 1 3.5325 2.5653 1.9467 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082529289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:34 Heat of formation + Delta-G solvation = -25.898728 kcal Electronic energy + Delta-G solvation = -12767.221271 eV Core-core repulsion = 10690.571550 eV Total energy + Delta-G solvation = -2076.649721 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81258 -37.07974 -35.10956 -31.81044 -31.14731 -29.87168 -27.18271 -24.94172 -23.06755 -22.44616 -20.37276 -19.21170 -17.27341 -16.34104 -15.91588 -15.65217 -14.96237 -14.71523 -14.37850 -13.91013 -13.68567 -13.41631 -13.27709 -12.84534 -12.76800 -12.53697 -12.40277 -12.22968 -11.79062 -11.64632 -11.45676 -11.20323 -10.99670 -10.90632 -9.32991 -9.14920 -8.62381 -6.31110 0.98388 1.15457 1.37081 1.50550 1.52991 2.21046 2.73263 3.73489 4.05298 4.14238 4.33796 4.52604 4.54955 4.70039 4.73249 4.80126 4.91315 5.04485 5.13861 5.15290 5.23346 5.26119 5.27769 5.37559 5.50160 5.59215 5.62639 5.73949 6.04796 6.12308 6.30435 6.41540 6.72808 6.96135 7.06556 8.34967 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.063991 B = 0.007446 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.455886 B = 3759.434031 C = 3892.822489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.030 4.030 4 H 0.071 0.929 5 C -0.137 4.137 6 C -0.191 4.191 7 C -0.098 4.098 8 C -0.189 4.189 9 C 0.071 3.929 10 C -0.505 4.505 11 H 0.072 0.928 12 C 0.034 3.966 13 N -0.829 5.829 14 Si 0.983 3.017 15 H -0.259 1.259 16 H -0.264 1.264 17 H -0.265 1.265 18 C -0.243 4.243 19 C -0.097 4.097 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.287 0.713 31 H 0.093 0.907 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 -1.799 0.697 8.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.049 4.049 4 H 0.089 0.911 5 C -0.194 4.194 6 C -0.192 4.192 7 C -0.116 4.116 8 C -0.209 4.209 9 C 0.069 3.931 10 C -0.534 4.534 11 H 0.090 0.910 12 C -0.180 4.180 13 N -0.456 5.456 14 Si 0.803 3.197 15 H -0.183 1.183 16 H -0.188 1.188 17 H -0.190 1.190 18 C -0.263 4.263 19 C -0.115 4.115 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.260 -1.782 0.448 8.462 hybrid contribution 1.186 -0.058 -0.070 1.189 sum -7.074 -1.840 0.378 7.319 Atomic orbital electron populations 1.21798 0.94175 1.01997 1.02316 1.21536 0.96685 0.95694 1.01069 1.19891 0.90103 0.96482 0.98376 0.91072 1.21840 1.01337 0.99603 0.96603 1.19597 0.95459 1.06676 0.97465 1.20696 0.93225 0.99635 0.98050 1.21293 0.93992 1.04459 1.01107 1.17984 0.93943 0.89255 0.91876 1.19829 0.91869 1.46892 0.94852 0.91003 1.26757 1.05611 0.91716 0.93943 1.69900 1.40167 1.35660 0.99859 0.85161 0.75970 0.78867 0.79688 1.18277 1.18829 1.18978 1.21175 0.94322 1.07954 1.02808 1.20791 0.93885 0.99282 0.97535 0.91833 0.92177 0.92302 0.93014 0.93375 0.93759 0.90550 0.94053 0.87918 0.88404 0.90270 0.88829 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.67 71.98 0.70 -2.44 16 2 C -0.11 -3.23 5.14 30.59 0.16 -3.08 16 3 C -0.03 -0.98 2.56 -11.54 -0.03 -1.01 16 4 H 0.07 2.15 7.86 -2.39 -0.02 2.13 16 5 C -0.14 -4.03 8.76 71.98 0.63 -3.40 16 6 C -0.19 -8.15 4.81 -19.67 -0.09 -8.25 16 7 C -0.10 -4.62 8.72 22.22 0.19 -4.42 16 8 C -0.19 -10.34 8.70 22.73 0.20 -10.14 16 9 C 0.07 4.04 5.58 -21.29 -0.12 3.92 16 10 C -0.50 -28.46 9.05 23.46 0.21 -28.24 16 11 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 12 C 0.03 1.77 5.14 85.25 0.44 2.20 16 13 N -0.83 -44.97 10.95 21.83 0.24 -44.73 16 14 Si 0.98 39.48 29.60 68.60 2.03 41.51 16 15 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 16 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 17 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 18 C -0.24 -12.47 9.80 22.73 0.22 -12.25 16 19 C -0.10 -4.36 9.64 22.22 0.21 -4.14 16 20 H 0.06 1.25 6.57 -2.38 -0.02 1.23 16 21 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 1.55 7.53 -2.39 -0.02 1.53 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.36 7.38 -2.39 -0.02 1.35 16 26 H 0.08 1.77 6.56 -2.39 -0.02 1.76 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.10 4.38 7.12 -2.91 -0.02 4.36 16 29 H 0.10 5.61 6.15 -2.91 -0.02 5.59 16 30 H 0.29 13.97 8.30 -92.70 -0.77 13.21 16 31 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 32 H 0.12 4.41 7.93 -2.91 -0.02 4.39 16 Total: -1.00 -59.89 263.37 6.07 -53.82 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 1.08 Total: 20.65 kcal Atomic # 6 Polarization: -73.97 SS G_CDS: 2.72 Total: -71.25 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.24 Total: -44.73 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -59.89 6.07 -53.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.922 kcal (2) G-P(sol) polarization free energy of solvation -59.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds