Wall clock time and date at job start Mon Mar 30 2020 02:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48503 * 109.46999 * 269.99821 * 3 2 1 5 5 H 1.48494 * 109.47349 * 29.99916 * 3 2 1 6 6 H 1.48503 * 109.47081 * 150.00194 * 3 2 1 7 7 C 1.39892 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00271 * 197.92430 * 7 2 1 9 9 C 1.41257 * 119.99615 * 17.92525 * 7 2 1 10 10 C 1.40927 * 120.16170 * 204.75467 * 9 7 2 11 11 C 1.36364 * 120.20412 * 180.25341 * 10 9 7 12 12 C 1.39211 * 120.34408 * 359.49287 * 11 10 9 13 13 O 1.35453 * 132.74303 * 180.25379 * 12 11 10 14 14 C 1.34235 * 109.26493 * 179.97438 * 13 12 11 15 15 O 1.21579 * 125.21583 * 180.02562 * 14 13 12 16 16 N 1.34763 * 109.56891 * 0.02562 * 14 13 12 17 17 H 0.97000 * 126.26649 * 180.02562 * 16 14 13 18 18 C 1.39504 * 107.46796 * 359.97438 * 16 14 13 19 19 C 1.37908 * 133.26698 * 179.97438 * 18 16 14 20 20 H 0.97002 * 119.99880 * 359.97438 * 1 2 3 21 21 H 1.08000 * 119.89605 * 359.97438 * 10 9 7 22 22 H 1.07998 * 119.82745 * 179.76843 * 11 10 9 23 23 H 1.07992 * 120.25936 * 0.02778 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2884 9 6 1.3533 -2.4052 -0.3754 10 6 1.8240 -3.6486 0.0921 11 6 1.1955 -4.8019 -0.2745 12 6 0.0785 -4.7610 -1.1042 13 8 -0.7258 -5.7257 -1.6114 14 6 -1.6783 -5.1564 -2.3667 15 8 -2.5545 -5.7556 -2.9595 16 7 -1.5145 -3.8187 -2.3672 17 1 -2.0677 -3.1731 -2.8340 18 6 -0.4043 -3.5325 -1.5724 19 6 0.2247 -2.3585 -1.2146 20 1 -0.4850 0.8401 0.0004 21 1 2.6878 -3.6884 0.7391 22 1 1.5637 -5.7517 0.0843 23 1 -0.1464 -1.4106 -1.5751 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082587739.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:13 Heat of formation + Delta-G solvation = -36.828325 kcal Electronic energy + Delta-G solvation = -12565.682928 eV Core-core repulsion = 10151.467164 eV Total energy + Delta-G solvation = -2414.215764 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.06781 -37.55928 -36.44709 -34.47839 -33.53669 -29.57006 -28.55401 -25.43445 -22.43419 -21.79788 -21.42912 -18.13578 -17.36470 -16.63131 -16.36188 -15.37030 -14.87471 -14.58414 -13.46745 -13.03974 -12.92257 -12.41671 -12.06525 -11.74002 -11.40090 -11.31426 -10.86074 -10.61728 -10.14127 -10.06484 -9.84047 -9.30148 -7.61764 -7.31496 -7.01247 -4.64627 2.39523 2.41483 2.93582 2.97099 2.97884 3.25019 3.32527 3.73143 4.00652 4.27745 5.28295 5.62982 5.92370 6.28730 6.46936 6.55235 6.80088 6.92297 7.14736 7.25365 7.51222 7.58367 7.76627 8.04134 8.31087 8.50116 8.54671 8.59761 9.88823 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.059302 B = 0.009374 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.047913 B = 2986.209594 C = 3383.985099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.448 4.448 8 H 0.087 0.913 9 C 0.124 3.876 10 C -0.202 4.202 11 C -0.048 4.048 12 C -0.111 4.111 13 O -0.245 6.245 14 C 0.630 3.370 15 O -0.533 6.533 16 N -0.653 5.653 17 H 0.431 0.569 18 C 0.091 3.909 19 C -0.164 4.164 20 H 0.285 0.715 21 H 0.114 0.886 22 H 0.108 0.892 23 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 1.362 -0.432 2.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.476 4.476 8 H 0.105 0.895 9 C 0.120 3.880 10 C -0.222 4.222 11 C -0.067 4.067 12 C -0.156 4.156 13 O -0.151 6.151 14 C 0.385 3.615 15 O -0.422 6.422 16 N -0.308 5.308 17 H 0.272 0.728 18 C -0.006 4.006 19 C -0.187 4.187 20 H 0.096 0.904 21 H 0.132 0.868 22 H 0.126 0.874 23 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.549 0.816 -0.621 1.858 hybrid contribution -0.136 1.179 -0.234 1.209 sum 1.414 1.995 -0.855 2.591 Atomic orbital electron populations 1.69820 1.07752 1.29898 1.33223 1.26007 0.94814 1.01802 0.91937 0.86203 0.80509 0.79946 0.79560 1.19061 1.20142 1.18313 1.19610 0.98484 0.90815 1.38712 0.89451 1.17362 0.90110 0.92467 0.88047 1.20633 1.03864 0.91569 1.06147 1.19190 0.92393 0.98508 0.96643 1.18630 1.01189 0.83303 1.12451 1.84676 1.37883 1.34921 1.57585 1.18556 0.81875 0.81060 0.79963 1.91049 1.34256 1.67885 1.48978 1.43522 1.30115 1.08120 1.49090 0.72850 1.18497 0.89557 0.96192 0.96344 1.20285 1.00573 0.93935 1.03895 0.90362 0.86802 0.87367 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.14 10.96 55.54 0.61 -17.53 14 2 C 0.07 1.65 5.14 -17.34 -0.09 1.57 14 3 Si 0.91 16.68 29.60 -169.99 -5.03 11.65 14 4 H -0.27 -4.84 7.11 56.52 0.40 -4.43 14 5 H -0.28 -5.00 7.11 56.52 0.40 -4.59 14 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 7 C -0.45 -10.43 9.04 -37.82 -0.34 -10.77 14 8 H 0.09 1.92 7.91 -52.49 -0.41 1.51 14 9 C 0.12 2.93 5.58 -106.80 -0.60 2.33 14 10 C -0.20 -4.35 9.72 -39.24 -0.38 -4.73 14 11 C -0.05 -1.01 9.99 -39.90 -0.40 -1.41 14 12 C -0.11 -2.52 7.38 -38.54 -0.28 -2.80 14 13 O -0.25 -5.58 10.71 -21.68 -0.23 -5.81 14 14 C 0.63 13.92 9.43 54.05 0.51 14.43 14 15 O -0.53 -12.49 18.05 -18.99 -0.34 -12.83 14 16 N -0.65 -13.12 6.23 -14.41 -0.09 -13.21 14 17 H 0.43 7.21 8.96 -40.82 -0.37 6.84 14 18 C 0.09 2.05 7.24 -83.81 -0.61 1.44 14 19 C -0.16 -3.85 8.71 -38.77 -0.34 -4.19 14 20 H 0.29 6.01 8.30 -40.82 -0.34 5.67 14 21 H 0.11 2.18 8.06 -52.49 -0.42 1.76 14 22 H 0.11 1.94 8.06 -52.49 -0.42 1.51 14 23 H 0.13 3.08 6.17 -52.49 -0.32 2.76 14 LS Contribution 216.53 15.07 3.26 3.26 Total: -1.00 -26.42 216.53 -5.43 -31.86 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -1.08 Total: 6.75 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.53 Total: -4.13 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.52 Total: -30.74 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.57 Total: -18.65 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -26.42 -5.43 -31.86 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082587739.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.971 kcal (2) G-P(sol) polarization free energy of solvation -26.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds