Wall clock time and date at job start Mon Mar 30 2020 02:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48503 * 109.46999 * 269.99821 * 3 2 1 5 5 H 1.48494 * 109.47349 * 29.99916 * 3 2 1 6 6 H 1.48503 * 109.47081 * 150.00194 * 3 2 1 7 7 C 1.39892 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00271 * 197.92430 * 7 2 1 9 9 C 1.41257 * 119.99615 * 17.92525 * 7 2 1 10 10 C 1.40927 * 120.16170 * 204.75467 * 9 7 2 11 11 C 1.36364 * 120.20412 * 180.25341 * 10 9 7 12 12 C 1.39211 * 120.34408 * 359.49287 * 11 10 9 13 13 O 1.35453 * 132.74303 * 180.25379 * 12 11 10 14 14 C 1.34235 * 109.26493 * 179.97438 * 13 12 11 15 15 O 1.21579 * 125.21583 * 180.02562 * 14 13 12 16 16 N 1.34763 * 109.56891 * 0.02562 * 14 13 12 17 17 H 0.97000 * 126.26649 * 180.02562 * 16 14 13 18 18 C 1.39504 * 107.46796 * 359.97438 * 16 14 13 19 19 C 1.37908 * 133.26698 * 179.97438 * 18 16 14 20 20 H 0.97002 * 119.99880 * 359.97438 * 1 2 3 21 21 H 1.08000 * 119.89605 * 359.97438 * 10 9 7 22 22 H 1.07998 * 119.82745 * 179.76843 * 11 10 9 23 23 H 1.07992 * 120.25936 * 0.02778 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2884 9 6 1.3533 -2.4052 -0.3754 10 6 1.8240 -3.6486 0.0921 11 6 1.1955 -4.8019 -0.2745 12 6 0.0785 -4.7610 -1.1042 13 8 -0.7258 -5.7257 -1.6114 14 6 -1.6783 -5.1564 -2.3667 15 8 -2.5545 -5.7556 -2.9595 16 7 -1.5145 -3.8187 -2.3672 17 1 -2.0677 -3.1731 -2.8340 18 6 -0.4043 -3.5325 -1.5724 19 6 0.2247 -2.3585 -1.2146 20 1 -0.4850 0.8401 0.0004 21 1 2.6878 -3.6884 0.7391 22 1 1.5637 -5.7517 0.0843 23 1 -0.1464 -1.4106 -1.5751 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082587739.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:13 Heat of formation + Delta-G solvation = -53.114334 kcal Electronic energy + Delta-G solvation = -12566.389143 eV Core-core repulsion = 10151.467164 eV Total energy + Delta-G solvation = -2414.921979 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.81319 -39.31516 -38.20973 -36.20096 -35.23916 -31.29840 -30.28677 -27.17601 -24.17873 -23.52955 -23.15538 -19.85262 -19.07259 -18.38870 -18.12515 -17.09013 -16.53126 -16.27541 -15.18718 -14.67089 -14.58575 -14.19533 -13.72727 -13.45787 -13.02618 -12.84093 -12.50128 -12.30147 -11.79195 -11.74548 -11.53905 -10.97676 -9.36280 -9.04987 -8.69773 -6.41523 0.67830 0.68214 1.45281 1.50850 1.55886 1.57972 1.58633 2.20756 2.28644 2.59051 3.53410 3.94858 4.20270 4.64581 4.81717 4.85951 5.11112 5.22768 5.43965 5.55467 5.79482 5.87680 6.01472 6.29463 6.56996 6.79079 6.81948 6.87243 8.23336 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.059302 B = 0.009374 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.047913 B = 2986.209594 C = 3383.985099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.038 3.962 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.471 4.471 8 H 0.096 0.904 9 C 0.100 3.900 10 C -0.204 4.204 11 C -0.043 4.043 12 C -0.131 4.131 13 O -0.250 6.250 14 C 0.629 3.371 15 O -0.549 6.549 16 N -0.636 5.636 17 H 0.444 0.556 18 C 0.087 3.913 19 C -0.183 4.183 20 H 0.293 0.707 21 H 0.137 0.863 22 H 0.141 0.859 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 1.880 -0.044 3.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.499 4.499 8 H 0.114 0.886 9 C 0.096 3.904 10 C -0.223 4.223 11 C -0.061 4.061 12 C -0.176 4.176 13 O -0.155 6.155 14 C 0.384 3.616 15 O -0.439 6.439 16 N -0.293 5.293 17 H 0.288 0.712 18 C -0.010 4.010 19 C -0.205 4.205 20 H 0.103 0.897 21 H 0.155 0.845 22 H 0.159 0.841 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.452 1.335 -0.239 2.802 hybrid contribution -0.422 0.995 -0.329 1.129 sum 2.030 2.330 -0.568 3.142 Atomic orbital electron populations 1.69864 1.09137 1.31182 1.33402 1.26814 0.95431 1.04770 0.90979 0.85148 0.79270 0.75633 0.79477 1.18893 1.19746 1.17635 1.19936 0.99053 0.91531 1.39405 0.88631 1.17745 0.90493 0.93740 0.88406 1.20911 1.04399 0.90965 1.06050 1.19540 0.91360 0.99806 0.95430 1.19005 1.01995 0.83250 1.13336 1.84646 1.38014 1.35228 1.57661 1.18547 0.81720 0.81388 0.79916 1.91035 1.34878 1.68248 1.49707 1.43402 1.29615 1.07818 1.48475 0.71191 1.18542 0.89921 0.96090 0.96471 1.20223 1.01484 0.93793 1.05051 0.89657 0.84519 0.84124 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.39 10.96 21.82 0.24 -37.15 14 2 C 0.04 1.64 5.14 85.24 0.44 2.08 14 3 Si 0.98 33.13 29.60 68.60 2.03 35.16 14 4 H -0.26 -8.78 7.11 99.48 0.71 -8.07 14 5 H -0.27 -8.95 7.11 99.48 0.71 -8.24 14 6 H -0.25 -8.19 7.11 99.48 0.71 -7.49 14 7 C -0.47 -21.60 9.04 23.41 0.21 -21.39 14 8 H 0.10 4.08 7.91 -2.91 -0.02 4.06 14 9 C 0.10 4.67 5.58 -21.27 -0.12 4.55 14 10 C -0.20 -8.42 9.72 22.49 0.22 -8.20 14 11 C -0.04 -1.70 9.99 22.07 0.22 -1.48 14 12 C -0.13 -5.80 7.38 22.94 0.17 -5.63 14 13 O -0.25 -11.13 10.71 9.63 0.10 -11.03 14 14 C 0.63 27.32 9.43 129.79 1.22 28.55 14 15 O -0.55 -25.32 18.05 19.26 0.35 -24.97 14 16 N -0.64 -25.21 6.23 -430.10 -2.68 -27.88 14 17 H 0.44 14.61 8.96 -92.71 -0.83 13.78 14 18 C 0.09 3.89 7.24 38.28 0.28 4.16 14 19 C -0.18 -8.59 8.71 22.80 0.20 -8.39 14 20 H 0.29 12.19 8.30 -92.71 -0.77 11.42 14 21 H 0.14 4.92 8.06 -2.91 -0.02 4.90 14 22 H 0.14 4.60 8.06 -2.91 -0.02 4.58 14 23 H 0.12 5.76 6.17 -2.91 -0.02 5.75 14 Total: -1.00 -54.26 216.53 3.31 -50.95 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.43 Total: 20.68 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 2.84 Total: -5.75 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -2.44 Total: -65.03 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: 0.45 Total: -36.00 kcal Atomic # 14 Polarization: 33.13 SS G_CDS: 2.03 Total: 35.16 kcal Total: -54.26 3.31 -50.95 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082587739.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.168 kcal (2) G-P(sol) polarization free energy of solvation -54.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds