Wall clock time and date at job start Mon Mar 30 2020 01:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38236 * 120.00242 * 179.74345 * 4 3 2 6 6 C 1.38231 * 119.99690 * 0.54724 * 5 4 3 7 7 C 1.50705 * 120.00009 * 179.72585 * 6 5 4 8 8 H 1.08999 * 109.47076 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46826 * 299.98148 * 7 6 5 10 10 C 1.50697 * 109.47092 * 59.98108 * 7 6 5 11 11 H 1.08006 * 119.99878 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99978 * 180.02562 * 10 7 6 13 13 N 1.31507 * 120.00287 * 359.97438 * 12 10 7 14 14 Si 1.86808 * 119.99827 * 180.02562 * 12 10 7 15 15 H 1.48490 * 109.47370 * 59.99718 * 14 12 10 16 16 H 1.48503 * 109.46767 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46951 * 299.99733 * 14 12 10 18 18 C 1.38241 * 120.00000 * 359.70650 * 6 5 4 19 19 C 1.38230 * 119.99983 * 0.02562 * 18 6 5 20 20 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 25 25 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 26 26 H 1.07994 * 119.99807 * 180.27539 * 5 4 3 27 27 H 1.08992 * 109.47360 * 59.99714 * 9 7 6 28 28 H 1.09004 * 109.46824 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.47245 * 299.99374 * 9 7 6 30 30 H 0.97001 * 120.00751 * 179.97438 * 13 12 10 31 31 H 1.07999 * 119.99721 * 179.97438 * 18 6 5 32 32 H 1.08007 * 119.99843 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7240 3.3756 -1.1971 6 6 2.9548 4.0270 0.0000 7 6 3.4576 5.4477 0.0001 8 1 3.5785 5.7903 1.0277 9 6 4.8055 5.5116 -0.7210 10 6 2.4654 6.3318 -0.7105 11 1 1.5608 5.9074 -1.1207 12 6 2.7122 7.6823 -0.8369 13 7 3.8133 8.1992 -0.3370 14 14 1.4818 8.7783 -1.7171 15 1 0.1741 8.7166 -1.0164 16 1 1.9774 10.1782 -1.7171 17 1 1.3159 8.3114 -3.1170 18 6 2.7240 3.3755 1.1972 19 6 2.2629 2.0723 1.1971 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 2.0927 1.5598 -2.1325 26 1 2.9039 3.8847 -2.1324 27 1 4.6844 5.1691 -1.7486 28 1 5.1694 6.5391 -0.7206 29 1 5.5232 4.8722 -0.2070 30 1 3.9872 9.1493 -0.4262 31 1 2.9047 3.8843 2.1325 32 1 2.0830 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083963647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:34 Heat of formation + Delta-G solvation = -17.517286 kcal Electronic energy + Delta-G solvation = -12746.236189 eV Core-core repulsion = 10669.949915 eV Total energy + Delta-G solvation = -2076.286275 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.31630 -36.72567 -34.57118 -32.47541 -31.64840 -29.07738 -27.22499 -24.91107 -23.46312 -22.53860 -20.97286 -18.30886 -17.20413 -16.41289 -16.24374 -15.67664 -14.76212 -14.64681 -14.35722 -14.11704 -13.96842 -13.56681 -13.16276 -13.02119 -12.81952 -12.43118 -12.28801 -12.20126 -11.93956 -11.88982 -11.54376 -11.13110 -10.99115 -10.48364 -9.65738 -9.13761 -8.10775 -6.25349 0.65957 0.68542 1.40276 1.41458 1.49525 2.41596 3.05157 3.17039 4.00822 4.06169 4.29829 4.38267 4.42075 4.61254 4.74330 4.79320 4.84724 4.87683 5.01468 5.13505 5.16049 5.20475 5.33954 5.39324 5.47638 5.53428 5.69394 5.72119 5.84779 6.04614 6.13588 6.31813 6.39824 6.83013 7.42362 8.93459 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.045653 B = 0.008118 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.175650 B = 3448.425777 C = 3727.481265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.107 4.107 4 C -0.122 4.122 5 C -0.125 4.125 6 C -0.066 4.066 7 C 0.069 3.931 8 H 0.001 0.999 9 C -0.120 4.120 10 C -0.523 4.523 11 H 0.049 0.951 12 C 0.013 3.987 13 N -0.917 5.917 14 Si 0.955 3.045 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.270 1.270 18 C -0.145 4.145 19 C -0.118 4.118 20 H 0.046 0.954 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.107 0.893 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.112 0.888 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 -13.757 0.084 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.107 4.107 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.066 4.066 7 C 0.051 3.949 8 H 0.020 0.980 9 C -0.178 4.178 10 C -0.561 4.561 11 H 0.067 0.933 12 C -0.185 4.185 13 N -0.557 5.557 14 Si 0.780 3.220 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.195 1.195 18 C -0.163 4.163 19 C -0.136 4.136 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.154 0.846 26 H 0.125 0.875 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.130 0.870 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.024 -13.587 0.104 14.170 hybrid contribution -0.301 1.288 -0.332 1.364 sum -4.325 -12.299 -0.229 13.039 Atomic orbital electron populations 1.21741 0.94488 1.02341 1.01597 1.20510 0.96303 0.90796 1.03599 1.20116 1.00360 0.97688 0.92508 1.21216 1.00050 0.94105 0.98642 1.21023 1.00658 0.95174 0.97502 1.20429 0.96295 0.96196 0.93674 1.17753 0.93629 0.88263 0.95269 0.98035 1.21613 0.96985 1.01124 0.98064 1.21361 1.05292 0.93064 1.36391 0.93263 1.25737 0.97149 0.99300 0.96333 1.70001 1.26194 1.12941 1.46548 0.85661 0.79281 0.77783 0.79261 1.19894 1.20609 1.19528 1.21213 1.01980 0.95886 0.97267 1.21173 0.99836 0.93990 0.98609 0.93451 0.93280 0.90584 0.90012 0.90182 0.84572 0.87503 0.95013 0.92199 0.95803 0.92846 0.87008 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.89 71.98 0.71 -2.07 16 2 C -0.07 -1.56 6.07 29.85 0.18 -1.38 16 3 C -0.11 -3.17 5.13 -19.87 -0.10 -3.27 16 4 C -0.12 -4.04 9.70 22.27 0.22 -3.83 16 5 C -0.13 -5.15 8.71 22.27 0.19 -4.96 16 6 C -0.07 -2.99 4.74 -19.86 -0.09 -3.08 16 7 C 0.07 3.67 2.48 -12.29 -0.03 3.64 16 8 H 0.00 0.09 7.88 -2.39 -0.02 0.07 16 9 C -0.12 -6.09 8.78 71.98 0.63 -5.46 16 10 C -0.52 -29.73 8.24 25.60 0.21 -29.52 16 11 H 0.05 2.79 7.60 -2.91 -0.02 2.77 16 12 C 0.01 0.75 5.30 84.65 0.45 1.20 16 13 N -0.92 -53.81 11.32 21.44 0.24 -53.56 16 14 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 C -0.15 -5.78 9.67 22.27 0.22 -5.56 16 19 C -0.12 -3.79 9.70 22.27 0.22 -3.58 16 20 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 24 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 25 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 26 H 0.11 4.54 7.58 -2.91 -0.02 4.52 16 27 H 0.03 1.52 7.39 -2.39 -0.02 1.51 16 28 H 0.06 3.31 6.07 -2.38 -0.01 3.30 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.11 4.33 7.95 -2.91 -0.02 4.31 16 32 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -61.91 268.22 6.14 -55.77 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.07 Total: 9.27 kcal Atomic # 6 Polarization: -60.67 SS G_CDS: 2.80 Total: -57.87 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.24 Total: -53.56 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -61.91 6.14 -55.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083963647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.255 kcal (2) G-P(sol) polarization free energy of solvation -61.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds