Wall clock time and date at job start Mon Mar 30 2020 01:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46785 * 2 1 4 4 C 1.52995 * 109.47394 * 120.00129 * 2 1 3 5 5 H 1.09005 * 109.47051 * 61.18438 * 4 2 1 6 6 C 1.50698 * 109.47441 * 181.18264 * 4 2 1 7 7 H 1.08002 * 119.99957 * 114.86179 * 6 4 2 8 8 C 1.37878 * 120.00004 * 294.86664 * 6 4 2 9 9 N 1.31513 * 120.00205 * 4.54782 * 8 6 4 10 10 Si 1.86804 * 119.99621 * 184.54739 * 8 6 4 11 11 H 1.48501 * 109.47001 * 90.00237 * 10 8 6 12 12 H 1.48504 * 109.46911 * 209.99744 * 10 8 6 13 13 H 1.48491 * 109.47258 * 329.99900 * 10 8 6 14 14 C 1.50699 * 109.47222 * 301.19001 * 4 2 1 15 15 C 1.38246 * 119.99503 * 284.46504 * 14 4 2 16 16 C 1.38235 * 119.99729 * 179.78637 * 15 14 4 17 17 C 1.38233 * 120.00051 * 0.44554 * 16 15 14 18 18 C 1.38240 * 120.00186 * 359.80712 * 17 16 15 19 19 C 1.38236 * 120.00440 * 104.73974 * 14 4 2 20 20 H 1.09008 * 109.47201 * 175.39594 * 1 2 3 21 21 H 1.09005 * 109.47500 * 55.40180 * 1 2 3 22 22 H 1.09000 * 109.47629 * 295.39805 * 1 2 3 23 23 H 1.09007 * 109.47326 * 240.00608 * 2 1 3 24 24 H 1.09005 * 109.47004 * 55.04406 * 3 2 1 25 25 H 1.08998 * 109.46659 * 175.03446 * 3 2 1 26 26 H 1.09001 * 109.47359 * 295.03848 * 3 2 1 27 27 H 0.96999 * 119.99976 * 179.97438 * 9 8 6 28 28 H 1.07992 * 119.99936 * 0.02562 * 15 14 4 29 29 H 1.07993 * 119.99846 * 180.27329 * 16 15 14 30 30 H 1.07994 * 120.00308 * 179.83221 * 17 16 15 31 31 H 1.07996 * 120.00278 * 179.97438 * 18 17 16 32 32 H 1.07991 * 119.99740 * 359.97438 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6941 -1.7549 1.2386 6 6 3.5467 -0.6959 1.2639 7 1 4.0701 -0.1539 2.0377 8 6 4.2570 -1.3645 0.2895 9 7 3.6220 -1.9491 -0.7027 10 14 6.1214 -1.4400 0.3789 11 1 6.5318 -2.6401 1.1513 12 1 6.6799 -1.5207 -0.9947 13 1 6.6345 -0.2193 1.0510 14 6 1.5138 -0.0281 2.4795 15 6 2.0648 1.1732 2.8849 16 6 1.5792 1.8112 4.0110 17 6 0.5488 1.2434 4.7368 18 6 0.0013 0.0396 4.3344 19 6 0.4840 -0.5963 3.2058 20 1 -0.3634 -1.0244 -0.0825 21 1 -0.3634 0.5835 -0.8459 22 1 -0.3634 0.4408 0.9283 23 1 1.8934 -0.5138 -0.8901 24 1 1.6058 1.9814 0.8423 25 1 3.1262 1.4438 0.0890 26 1 1.7509 1.9301 -0.9311 27 1 4.1218 -2.4192 -1.3884 28 1 2.8720 1.6151 2.3198 29 1 2.0066 2.7518 4.3252 30 1 0.1712 1.7405 5.6181 31 1 -0.8034 -0.4042 4.9016 32 1 0.0563 -1.5368 2.8914 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084332538.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:27 Heat of formation + Delta-G solvation = -9.021720 kcal Electronic energy + Delta-G solvation = -13371.422286 eV Core-core repulsion = 11295.504406 eV Total energy + Delta-G solvation = -2075.917879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.36332 -37.21897 -34.03159 -31.81575 -31.61918 -28.65159 -27.76566 -25.20689 -23.10568 -22.35467 -20.30774 -18.20446 -17.32679 -16.52570 -15.92877 -15.67947 -15.31691 -14.54572 -14.31128 -14.07069 -13.86322 -13.24680 -13.12333 -12.81578 -12.75536 -12.64615 -12.19229 -12.10564 -11.60315 -11.56097 -11.45289 -10.83825 -10.74880 -10.41635 -9.56346 -9.21653 -8.05580 -6.15375 0.71636 0.78507 1.40479 1.42491 1.51074 2.44808 3.13786 3.26077 4.23378 4.30578 4.38203 4.46907 4.56218 4.58525 4.68065 4.86154 4.93958 4.98168 5.11897 5.16332 5.30040 5.33212 5.39545 5.56031 5.68573 5.78012 5.79251 5.82306 5.87002 6.09954 6.22914 6.39438 6.48992 6.92596 7.49938 8.99360 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.034053 B = 0.011925 C = 0.010456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.040838 B = 2347.542663 C = 2677.134650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 C -0.123 4.123 4 C 0.083 3.917 5 H -0.003 1.003 6 C -0.511 4.511 7 H 0.053 0.947 8 C 0.016 3.984 9 N -0.915 5.915 10 Si 0.944 3.056 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.268 1.268 14 C -0.052 4.052 15 C -0.127 4.127 16 C -0.130 4.130 17 C -0.142 4.142 18 C -0.124 4.124 19 C -0.149 4.149 20 H 0.037 0.963 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.259 0.741 28 H 0.112 0.888 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 6.083 6.556 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 C -0.180 4.180 4 C 0.064 3.936 5 H 0.015 0.985 6 C -0.549 4.549 7 H 0.071 0.929 8 C -0.182 4.182 9 N -0.555 5.555 10 Si 0.770 3.230 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.052 4.052 15 C -0.145 4.145 16 C -0.148 4.148 17 C -0.160 4.160 18 C -0.141 4.141 19 C -0.167 4.167 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.155 0.845 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.342 5.984 6.395 10.258 hybrid contribution 1.167 -0.575 -0.438 1.372 sum -4.175 5.409 5.957 9.065 Atomic orbital electron populations 1.21813 0.96534 1.00110 1.00744 1.20966 0.93335 0.95963 1.00077 1.21753 1.00581 0.96108 0.99589 1.17763 0.94079 0.92572 0.89136 0.98522 1.21402 0.91805 1.31199 1.10518 0.92927 1.25622 1.01945 0.95509 0.95139 1.70026 1.36498 1.36339 1.12645 0.85767 0.81582 0.78511 0.77099 1.20636 1.21123 1.19234 1.20359 0.93858 0.94698 0.96289 1.21202 1.00205 0.95724 0.97335 1.21409 0.97661 1.00539 0.95169 1.21313 0.97515 0.96298 1.00855 1.21325 1.00467 0.96027 0.96323 1.21211 0.98059 1.00442 0.97015 0.94419 0.92969 0.93162 0.92074 0.92775 0.93960 0.94263 0.93205 0.86971 0.84513 0.83675 0.84197 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.96 71.98 0.65 -4.69 16 2 C -0.08 -3.94 2.59 -10.80 -0.03 -3.97 16 3 C -0.12 -5.21 7.68 71.98 0.55 -4.65 16 4 C 0.08 4.15 1.85 -12.29 -0.02 4.12 16 5 H 0.00 -0.19 7.95 -2.38 -0.02 -0.21 16 6 C -0.51 -27.68 6.52 25.60 0.17 -27.52 16 7 H 0.05 2.84 6.79 -2.91 -0.02 2.82 16 8 C 0.02 0.90 5.36 84.65 0.45 1.36 16 9 N -0.92 -52.67 11.54 21.45 0.25 -52.42 16 10 Si 0.94 43.75 29.54 68.60 2.03 45.78 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 C -0.05 -2.22 3.55 -19.86 -0.07 -2.29 16 15 C -0.13 -4.96 6.66 22.27 0.15 -4.81 16 16 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 17 C -0.14 -4.01 10.05 22.27 0.22 -3.79 16 18 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 19 C -0.15 -5.63 8.97 22.27 0.20 -5.43 16 20 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 21 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 22 H 0.05 1.90 6.54 -2.39 -0.02 1.88 16 23 H 0.06 3.29 6.34 -2.38 -0.02 3.27 16 24 H 0.05 2.11 5.72 -2.38 -0.01 2.10 16 25 H 0.04 1.93 6.86 -2.39 -0.02 1.91 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.11 4.61 5.95 -2.91 -0.02 4.60 16 29 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 31 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.11 4.03 8.00 -2.92 -0.02 4.00 16 Total: -1.00 -59.23 255.72 6.07 -53.16 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.08 Total: 12.55 kcal Atomic # 6 Polarization: -61.79 SS G_CDS: 2.72 Total: -59.07 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.25 Total: -52.42 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -59.23 6.07 -53.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332538.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.140 kcal (2) G-P(sol) polarization free energy of solvation -59.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds