Wall clock time and date at job start Mon Mar 30 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46987 * 119.99995 * 2 1 3 5 5 H 1.09003 * 109.46958 * 181.89485 * 4 2 1 6 6 C 1.50690 * 109.47254 * 61.89608 * 4 2 1 7 7 H 1.08006 * 120.00312 * 245.26566 * 6 4 2 8 8 C 1.37878 * 120.00412 * 65.26560 * 6 4 2 9 9 N 1.31518 * 119.99770 * 5.43694 * 8 6 4 10 10 Si 1.86800 * 120.00345 * 185.43823 * 8 6 4 11 11 H 1.48508 * 109.46908 * 60.00190 * 10 8 6 12 12 H 1.48500 * 109.47252 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47169 * 300.00317 * 10 8 6 14 14 C 1.50697 * 109.47245 * 301.89124 * 4 2 1 15 15 C 1.38238 * 120.00141 * 256.44725 * 14 4 2 16 16 C 1.38236 * 119.99905 * 180.02562 * 15 14 4 17 17 C 1.38234 * 120.00252 * 359.95018 * 16 15 14 18 18 C 1.38246 * 119.99995 * 0.02562 * 17 16 15 19 19 C 1.38236 * 119.99583 * 0.06418 * 18 17 16 20 20 H 1.09004 * 109.47114 * 305.70344 * 1 2 3 21 21 H 1.09007 * 109.47593 * 65.70581 * 1 2 3 22 22 H 1.09001 * 109.47157 * 185.70296 * 1 2 3 23 23 H 1.08996 * 109.46925 * 240.00215 * 2 1 3 24 24 H 1.09004 * 109.47245 * 184.86780 * 3 2 1 25 25 H 1.09007 * 109.47118 * 304.86519 * 3 2 1 26 26 H 1.08999 * 109.47496 * 64.86509 * 3 2 1 27 27 H 0.97000 * 120.00233 * 179.97438 * 9 8 6 28 28 H 1.07996 * 120.00342 * 359.97121 * 15 14 4 29 29 H 1.08001 * 120.00103 * 179.97438 * 16 15 14 30 30 H 1.08002 * 120.00429 * 179.72492 * 17 16 15 31 31 H 1.07997 * 119.99968 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.99935 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 3.1295 -0.6919 1.2664 6 6 1.5764 -2.1549 1.2260 7 1 0.8847 -2.5111 1.9751 8 6 2.0352 -3.0121 0.2484 9 7 2.9576 -2.6101 -0.5986 10 14 1.3469 -4.7444 0.1268 11 1 -0.1175 -4.6795 -0.1115 12 1 1.9999 -5.4587 -0.9995 13 1 1.6103 -5.4718 1.3943 14 6 1.4997 -0.0384 2.4792 15 6 2.3183 0.7867 3.2276 16 6 1.8228 1.4126 4.3562 17 6 0.5085 1.2142 4.7358 18 6 -0.3103 0.3894 3.9872 19 6 0.1858 -0.2379 2.8596 20 1 -0.3633 0.5998 0.8345 21 1 -0.3634 0.4228 -0.9367 22 1 -0.3633 -1.0226 0.1021 23 1 1.8933 -0.5138 -0.8900 24 1 3.1265 1.4438 -0.0872 25 1 1.6071 1.9809 -0.8432 26 1 1.7495 1.9306 0.9303 27 1 3.2807 -3.2132 -1.2861 28 1 3.3451 0.9417 2.9311 29 1 2.4624 2.0569 4.9411 30 1 0.1226 1.6997 5.6201 31 1 -1.3370 0.2341 4.2840 32 1 -0.4537 -0.8826 2.2750 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084332539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:29 Heat of formation + Delta-G solvation = 2.981045 kcal Electronic energy + Delta-G solvation = -13364.412515 eV Core-core repulsion = 11289.015115 eV Total energy + Delta-G solvation = -2075.397400 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.84212 -35.54048 -32.05472 -30.30198 -30.16650 -26.81893 -26.13169 -23.34431 -21.66410 -20.81674 -18.60312 -16.28459 -15.76341 -14.75548 -14.23150 -14.20692 -13.66527 -12.91284 -12.67595 -12.44573 -12.21897 -11.70033 -11.49290 -11.17466 -10.91466 -10.87949 -10.52000 -10.49184 -9.95486 -9.79754 -9.71026 -9.05261 -8.94621 -8.35567 -8.14513 -7.70220 -6.02193 -4.04360 2.13827 2.21225 3.31453 3.36443 3.39224 4.41947 4.62177 5.30788 5.54724 5.61484 5.71832 6.00833 6.18498 6.22467 6.28655 6.31996 6.39663 6.55050 6.72960 6.77405 6.81278 6.92777 6.96353 7.17929 7.27320 7.30968 7.46540 7.50137 7.74575 7.80765 7.96828 8.04153 8.41753 8.96982 9.58149 11.06074 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.034262 B = 0.011874 C = 0.010498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.030461 B = 2357.615608 C = 2666.558319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 C -0.145 4.145 4 C 0.080 3.920 5 H 0.039 0.961 6 C -0.507 4.507 7 H 0.058 0.942 8 C 0.065 3.935 9 N -0.888 5.888 10 Si 0.887 3.113 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 C -0.027 4.027 15 C -0.133 4.133 16 C -0.129 4.129 17 C -0.151 4.151 18 C -0.133 4.133 19 C -0.109 4.109 20 H 0.041 0.959 21 H 0.024 0.976 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.043 0.957 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.261 0.739 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 5.901 4.537 8.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.203 4.203 4 C 0.062 3.938 5 H 0.057 0.943 6 C -0.545 4.545 7 H 0.076 0.924 8 C -0.137 4.137 9 N -0.526 5.526 10 Si 0.714 3.286 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.027 4.027 15 C -0.151 4.151 16 C -0.147 4.147 17 C -0.169 4.169 18 C -0.151 4.151 19 C -0.127 4.127 20 H 0.060 0.940 21 H 0.043 0.957 22 H 0.081 0.919 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.410 5.835 4.375 8.051 hybrid contribution -0.302 -0.961 -0.081 1.010 sum -3.712 4.875 4.294 7.482 Atomic orbital electron populations 1.21915 0.97471 1.01527 0.98446 1.21032 0.94118 0.92879 1.01931 1.21936 1.00112 0.98540 0.99690 1.17921 0.96360 0.93084 0.86450 0.94260 1.21098 1.27114 0.93944 1.12353 0.92394 1.24932 0.94719 0.98096 0.95946 1.69922 1.28067 1.36197 1.18461 0.86741 0.79378 0.84858 0.77580 1.20223 1.21358 1.20322 1.20597 0.92990 0.92619 0.96511 1.21128 0.99715 0.98522 0.95772 1.20964 0.95568 1.00666 0.97551 1.20849 0.94562 1.01236 1.00265 1.21091 0.99060 0.98580 0.96377 1.21258 0.96269 0.99170 0.95976 0.93985 0.95663 0.91877 0.89383 0.93798 0.94769 0.93818 0.92933 0.87020 0.87466 0.87602 0.87400 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 7.66 37.16 0.28 -2.54 16 2 C -0.08 -1.82 2.59 -90.62 -0.23 -2.06 16 3 C -0.15 -2.87 9.01 37.16 0.33 -2.54 16 4 C 0.08 1.94 1.73 -92.93 -0.16 1.78 16 5 H 0.04 1.05 7.95 -51.93 -0.41 0.64 16 6 C -0.51 -13.34 6.65 -34.44 -0.23 -13.57 16 7 H 0.06 1.52 6.72 -52.48 -0.35 1.17 16 8 C 0.06 1.74 5.25 -17.82 -0.09 1.65 16 9 N -0.89 -24.81 11.95 55.43 0.66 -24.15 16 10 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C -0.03 -0.58 3.64 -104.62 -0.38 -0.96 16 15 C -0.13 -2.58 8.88 -39.58 -0.35 -2.93 16 16 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 17 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 18 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 19 C -0.11 -2.18 6.57 -39.58 -0.26 -2.44 16 20 H 0.04 0.82 5.89 -51.93 -0.31 0.51 16 21 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 22 H 0.06 1.39 6.74 -51.93 -0.35 1.04 16 23 H 0.09 2.25 6.68 -51.93 -0.35 1.91 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.83 6.55 -51.93 -0.34 0.49 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.11 2.07 8.01 -52.49 -0.42 1.65 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.13 2.57 5.92 -52.49 -0.31 2.26 16 LS Contribution 256.30 15.07 3.86 3.86 Total: -1.00 -27.18 256.30 -7.29 -34.47 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.51 Total: 1.69 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: -2.28 Total: -31.79 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.66 Total: -24.15 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.18 -7.29 -34.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.455 kcal (2) G-P(sol) polarization free energy of solvation -27.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds