Wall clock time and date at job start Mon Mar 30 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 H 1.09005 * 109.46877 * 305.63680 * 3 2 1 5 5 C 1.50694 * 109.47114 * 185.63660 * 3 2 1 6 6 H 1.08001 * 120.00170 * 239.99724 * 5 3 2 7 7 C 1.37876 * 120.00264 * 59.99939 * 5 3 2 8 8 N 1.31512 * 119.99807 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00379 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46839 * 89.99920 * 9 7 5 11 11 H 1.48494 * 109.47544 * 210.00152 * 9 7 5 12 12 H 1.48503 * 109.47099 * 330.00502 * 9 7 5 13 13 C 1.53002 * 109.47201 * 65.63310 * 3 2 1 14 14 C 1.50698 * 109.47096 * 185.74253 * 13 3 2 15 15 C 1.38229 * 119.99990 * 84.14977 * 14 13 3 16 16 C 1.38240 * 120.00066 * 180.02562 * 15 14 13 17 17 C 1.38235 * 119.99807 * 0.02562 * 16 15 14 18 18 C 1.38232 * 120.00100 * 0.25333 * 17 16 15 19 19 C 1.38235 * 119.99883 * 264.17214 * 14 13 3 20 20 H 1.09002 * 109.47230 * 294.57626 * 1 2 3 21 21 H 1.09001 * 109.47842 * 54.58234 * 1 2 3 22 22 H 1.09004 * 109.46931 * 174.57870 * 1 2 3 23 23 H 1.09000 * 109.47099 * 240.00544 * 2 1 3 24 24 H 1.08997 * 109.47612 * 119.99595 * 2 1 3 25 25 H 0.97008 * 120.00010 * 179.97438 * 8 7 5 26 26 H 1.09003 * 109.46378 * 65.74309 * 13 3 2 27 27 H 1.08995 * 109.47339 * 305.74891 * 13 3 2 28 28 H 1.08000 * 120.00269 * 359.97438 * 15 14 13 29 29 H 1.07996 * 119.99914 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.99685 * 179.97438 * 17 16 15 31 31 H 1.08004 * 120.00123 * 179.72825 * 18 17 16 32 32 H 1.07997 * 120.00364 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5964 1.9847 -0.8353 5 6 3.5404 1.4449 -0.1395 6 1 4.1538 1.8867 0.6318 7 6 4.1302 0.8831 -1.2520 8 7 3.3833 0.3457 -2.1915 9 14 5.9901 0.8867 -1.4253 10 1 6.5465 -0.3471 -0.8140 11 1 6.3531 0.9331 -2.8645 12 1 6.5493 2.0767 -0.7350 13 6 1.6488 2.1218 1.3140 14 6 2.0258 3.5797 1.2575 15 6 1.1721 4.4920 0.6661 16 6 1.5181 5.8293 0.6138 17 6 2.7182 6.2543 1.1524 18 6 3.5746 5.3411 1.7387 19 6 3.2256 4.0048 1.7966 20 1 -0.3634 0.4274 0.9346 21 1 -0.3635 0.5955 -0.8375 22 1 -0.3633 -1.0231 -0.0971 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 3.7982 -0.0493 -2.9744 26 1 2.1732 1.6426 2.1407 27 1 0.5731 2.0301 1.4643 28 1 0.2350 4.1598 0.2442 29 1 0.8513 6.5420 0.1514 30 1 2.9888 7.2990 1.1112 31 1 4.5142 5.6725 2.1556 32 1 3.8926 3.2921 2.2587 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084332544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:38 Heat of formation + Delta-G solvation = -14.792716 kcal Electronic energy + Delta-G solvation = -13027.575872 eV Core-core repulsion = 10951.407744 eV Total energy + Delta-G solvation = -2076.168128 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.08536 -37.25979 -33.91285 -32.63172 -31.61880 -29.36611 -26.93022 -24.48707 -23.29666 -22.12784 -20.82425 -18.38573 -17.46939 -16.59158 -15.99480 -15.82044 -15.00838 -14.79715 -14.44499 -14.14799 -13.69767 -13.39895 -13.25361 -12.95647 -12.73200 -12.46999 -12.31596 -11.93557 -11.74097 -11.65189 -11.37710 -11.09038 -10.61857 -10.34374 -9.64783 -9.29498 -8.02263 -6.13194 0.65950 0.68915 1.39263 1.40822 1.49768 2.45727 3.06857 3.25351 4.12648 4.17268 4.31270 4.40401 4.55041 4.60023 4.68742 4.81251 4.83255 4.91969 5.04882 5.10570 5.26657 5.32219 5.38785 5.46235 5.60294 5.70837 5.73617 5.76465 5.95073 6.08872 6.21264 6.34119 6.48729 6.98301 7.53036 9.01709 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.024503 B = 0.012975 C = 0.009454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.440000 B = 2157.407979 C = 2960.931737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C 0.057 3.943 4 H -0.007 1.007 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.270 1.270 13 C -0.069 4.069 14 C -0.065 4.065 15 C -0.142 4.142 16 C -0.125 4.125 17 C -0.141 4.141 18 C -0.130 4.130 19 C -0.129 4.129 20 H 0.058 0.942 21 H 0.037 0.963 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.257 0.743 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 7.567 6.436 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C 0.039 3.961 4 H 0.011 0.989 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.768 3.232 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.195 1.195 13 C -0.106 4.106 14 C -0.065 4.065 15 C -0.160 4.160 16 C -0.143 4.143 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.147 4.147 20 H 0.077 0.923 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.894 7.481 6.272 10.182 hybrid contribution 1.099 -0.410 -0.523 1.284 sum -1.795 7.071 5.749 9.289 Atomic orbital electron populations 1.21752 0.96462 1.00517 1.00741 1.21502 0.94230 0.99378 1.00521 1.18590 0.94311 0.91971 0.91222 0.98889 1.21604 0.93151 1.35859 1.04556 0.92649 1.25651 1.01472 0.95649 0.95952 1.70018 1.35904 1.40248 1.09827 0.85806 0.81974 0.78475 0.76952 1.20211 1.21372 1.19495 1.20716 0.99769 0.91092 0.99048 1.20078 0.94615 0.95828 0.95939 1.21195 1.00286 0.93958 1.00530 1.21375 0.97705 0.95470 0.99765 1.21361 0.94593 1.00431 0.99489 1.21383 1.00249 0.92995 1.00146 1.21160 0.96248 0.96333 1.01000 0.92302 0.94367 0.93140 0.92172 0.95075 0.93429 0.92655 0.91525 0.86253 0.84017 0.83696 0.84584 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.55 71.98 0.69 -4.58 16 2 C -0.12 -5.62 5.24 30.59 0.16 -5.46 16 3 C 0.06 2.86 1.75 -11.54 -0.02 2.84 16 4 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 5 C -0.51 -28.16 8.01 25.60 0.21 -27.95 16 6 H 0.06 2.98 6.20 -2.91 -0.02 2.96 16 7 C 0.01 0.58 5.29 84.65 0.45 1.02 16 8 N -0.92 -53.98 11.29 21.45 0.24 -53.74 16 9 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 13 C -0.07 -2.86 4.66 29.85 0.14 -2.72 16 14 C -0.06 -2.56 4.75 -19.87 -0.09 -2.66 16 15 C -0.14 -5.07 9.73 22.27 0.22 -4.85 16 16 C -0.13 -3.80 10.05 22.27 0.22 -3.57 16 17 C -0.14 -4.06 10.05 22.27 0.22 -3.84 16 18 C -0.13 -4.14 10.05 22.27 0.22 -3.92 16 19 C -0.13 -4.88 8.62 22.27 0.19 -4.69 16 20 H 0.06 1.98 6.73 -2.39 -0.02 1.96 16 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.06 3.28 5.94 -2.39 -0.01 3.26 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 26 H 0.05 2.26 8.05 -2.39 -0.02 2.24 16 27 H 0.07 2.47 6.44 -2.39 -0.02 2.45 16 28 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 29 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.11 4.19 7.53 -2.91 -0.02 4.16 16 Total: -1.00 -61.24 263.87 5.95 -55.30 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.07 Total: 12.24 kcal Atomic # 6 Polarization: -62.97 SS G_CDS: 2.60 Total: -60.36 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.24 Total: -53.74 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -61.24 5.95 -55.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.504 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds