Wall clock time and date at job start Mon Mar 30 2020 01:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46740 * 2 1 4 4 H 1.08997 * 109.47329 * 305.56402 * 3 2 1 5 5 C 1.50701 * 109.47262 * 65.56306 * 3 2 1 6 6 H 1.08007 * 119.99921 * 55.30486 * 5 3 2 7 7 C 1.37875 * 120.00163 * 235.03438 * 5 3 2 8 8 N 1.31517 * 119.99969 * 173.84164 * 7 5 3 9 9 Si 1.86800 * 119.99857 * 353.84108 * 7 5 3 10 10 H 1.48497 * 109.47231 * 85.71131 * 9 7 5 11 11 H 1.48505 * 109.47114 * 205.70690 * 9 7 5 12 12 H 1.48503 * 109.47158 * 325.70741 * 9 7 5 13 13 C 1.50694 * 109.47035 * 185.55970 * 3 2 1 14 14 C 1.38253 * 120.00575 * 299.73060 * 13 3 2 15 15 C 1.38218 * 120.00365 * 179.76606 * 14 13 3 16 16 C 1.38253 * 119.99717 * 0.50227 * 15 14 13 17 17 C 1.38221 * 119.99852 * 359.75114 * 16 15 14 18 18 C 1.50701 * 119.99606 * 179.97438 * 17 16 15 19 19 C 1.38216 * 119.99869 * 119.99971 * 13 3 2 20 20 H 1.08996 * 109.47028 * 301.13321 * 1 2 3 21 21 H 1.08994 * 109.46955 * 61.14006 * 1 2 3 22 22 H 1.08996 * 109.46562 * 181.13871 * 1 2 3 23 23 H 1.08996 * 109.47509 * 240.00331 * 2 1 3 24 24 H 1.08997 * 109.47413 * 119.99581 * 2 1 3 25 25 H 0.97005 * 119.99736 * 179.97438 * 8 7 5 26 26 H 1.08007 * 119.99620 * 359.97438 * 14 13 3 27 27 H 1.07996 * 120.00205 * 180.23020 * 15 14 13 28 28 H 1.08001 * 120.00342 * 179.72368 * 16 15 14 29 29 H 1.09008 * 109.46778 * 270.02044 * 18 17 16 30 30 H 1.09000 * 109.47703 * 30.01497 * 18 17 16 31 31 H 1.08997 * 109.47124 * 150.02112 * 18 17 16 32 32 H 1.08005 * 119.99658 * 0.02562 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5976 1.9844 -0.8359 5 6 1.6532 2.1121 1.2935 6 1 1.9383 1.6699 2.2368 7 6 0.9404 3.2921 1.2728 8 7 0.4983 3.8131 2.3966 9 14 0.6025 4.1508 -0.3514 10 1 -0.6239 3.5823 -0.9661 11 1 0.4086 5.6036 -0.1123 12 1 1.7543 3.9492 -1.2668 13 6 3.5406 1.4449 -0.1376 14 6 4.3232 0.8190 0.8148 15 6 5.6994 0.8169 0.6859 16 6 6.2938 1.4498 -0.3899 17 6 5.5117 2.0801 -1.3394 18 6 6.1597 2.7705 -2.5118 19 6 4.1350 2.0776 -1.2132 20 1 -0.3633 0.5313 0.8796 21 1 -0.3633 0.4960 -0.9000 22 1 -0.3632 -1.0275 0.0204 23 1 1.8935 -0.5137 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 -0.0029 4.6435 2.3820 26 1 3.8591 0.3286 1.6578 27 1 6.3105 0.3248 1.4280 28 1 7.3694 1.4521 -0.4883 29 1 6.3639 3.8098 -2.2540 30 1 7.0945 2.2671 -2.7586 31 1 5.4896 2.7340 -3.3706 32 1 3.5238 2.5707 -1.9547 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084332545.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:41 Heat of formation + Delta-G solvation = -18.831399 kcal Electronic energy + Delta-G solvation = -13046.180430 eV Core-core repulsion = 10969.837171 eV Total energy + Delta-G solvation = -2076.343259 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30323 -36.89329 -34.05062 -33.21524 -31.78451 -28.80128 -27.55580 -25.46774 -22.86354 -22.62128 -20.50370 -19.00343 -17.30587 -16.41991 -16.07110 -15.60577 -15.00307 -14.75560 -14.56274 -14.42910 -13.84935 -13.55876 -13.26427 -12.95808 -12.83396 -12.75618 -12.43464 -12.14441 -11.88089 -11.77346 -11.53131 -11.30324 -10.93516 -10.64602 -9.51437 -9.21239 -8.27834 -6.27654 0.63417 0.71147 1.30928 1.33996 1.42899 2.34010 2.99653 3.15651 4.00240 4.13489 4.24312 4.36439 4.42089 4.56661 4.60574 4.69678 4.76790 4.86894 4.93158 5.00676 5.08095 5.12175 5.34415 5.38131 5.41633 5.50959 5.56764 5.70150 5.77702 5.84888 6.00470 6.32148 6.39482 6.76142 7.35057 8.88975 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.012257 C = 0.010824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.164752 B = 2283.823602 C = 2586.138220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C 0.039 3.961 4 H 0.038 0.962 5 C -0.486 4.486 6 H 0.035 0.965 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.927 3.073 10 H -0.262 1.262 11 H -0.292 1.292 12 H -0.248 1.248 13 C -0.057 4.057 14 C -0.135 4.135 15 C -0.120 4.120 16 C -0.145 4.145 17 C -0.095 4.095 18 C -0.107 4.107 19 C -0.156 4.156 20 H 0.038 0.962 21 H 0.044 0.956 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.264 0.736 26 H 0.104 0.896 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.969 -4.750 -9.753 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 C 0.020 3.980 4 H 0.056 0.944 5 C -0.524 4.524 6 H 0.053 0.947 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.752 3.248 10 H -0.187 1.187 11 H -0.219 1.219 12 H -0.172 1.172 13 C -0.057 4.057 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.163 4.163 17 C -0.095 4.095 18 C -0.164 4.164 19 C -0.174 4.174 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.122 0.878 27 H 0.157 0.843 28 H 0.164 0.836 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.865 -4.605 -9.682 13.911 hybrid contribution -0.665 0.769 0.103 1.022 sum 8.199 -3.837 -9.579 13.180 Atomic orbital electron populations 1.21626 0.96011 1.00895 1.00989 1.21466 0.95989 0.96205 1.00048 1.18408 0.88848 0.95109 0.95639 0.94421 1.21009 1.32618 1.06829 0.91905 0.94717 1.25833 0.95261 0.97816 0.99228 1.70044 1.38971 1.21239 1.28662 0.86024 0.79974 0.77488 0.81272 1.18690 1.21871 1.17224 1.20550 0.97459 0.94419 0.93301 1.20983 0.94319 1.01408 0.98655 1.21369 0.94103 0.99675 0.98653 1.21190 1.00374 0.99880 0.94854 1.20232 0.92927 0.98376 0.97936 1.20794 1.00997 1.00120 0.94450 1.21102 0.95190 1.02241 0.98907 0.94278 0.93658 0.91634 0.92509 0.93401 0.92745 0.87782 0.84324 0.83631 0.90944 0.89590 0.91417 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 9.75 71.98 0.70 -4.63 16 2 C -0.10 -4.02 5.12 30.60 0.16 -3.86 16 3 C 0.04 1.81 1.88 -12.29 -0.02 1.79 16 4 H 0.04 1.76 4.58 -2.39 -0.01 1.74 16 5 C -0.49 -27.32 7.46 25.60 0.19 -27.13 16 6 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 7 C 0.02 0.89 5.47 84.65 0.46 1.35 16 8 N -0.95 -59.41 13.96 21.45 0.30 -59.12 16 9 Si 0.93 44.53 26.94 68.60 1.85 46.38 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 H -0.25 -11.17 6.61 99.48 0.66 -10.51 16 13 C -0.06 -2.46 4.77 -19.87 -0.09 -2.55 16 14 C -0.14 -5.46 8.87 22.27 0.20 -5.26 16 15 C -0.12 -3.96 10.05 22.27 0.22 -3.73 16 16 C -0.15 -4.33 9.70 22.27 0.22 -4.11 16 17 C -0.09 -3.03 5.88 -19.87 -0.12 -3.15 16 18 C -0.11 -2.48 10.01 71.24 0.71 -1.77 16 19 C -0.16 -6.07 9.33 22.27 0.21 -5.86 16 20 H 0.04 1.74 7.36 -2.39 -0.02 1.73 16 21 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 24 H 0.05 1.95 7.61 -2.39 -0.02 1.94 16 25 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 26 H 0.10 4.34 7.66 -2.91 -0.02 4.32 16 27 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 31 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 32 H 0.11 4.13 7.74 -2.91 -0.02 4.11 16 Total: -1.00 -64.76 266.18 6.01 -58.75 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.02 Total: 12.90 kcal Atomic # 6 Polarization: -61.75 SS G_CDS: 2.84 Total: -58.91 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.30 Total: -59.12 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.85 Total: 46.38 kcal Total: -64.76 6.01 -58.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332545.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.921 kcal (2) G-P(sol) polarization free energy of solvation -64.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds