Wall clock time and date at job start Mon Mar 30 2020 01:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46773 * 2 1 4 4 H 1.08998 * 109.47164 * 304.99916 * 3 2 1 5 5 C 1.50701 * 109.46893 * 184.99590 * 3 2 1 6 6 H 1.08005 * 120.00237 * 240.00202 * 5 3 2 7 7 C 1.37878 * 120.00065 * 60.00019 * 5 3 2 8 8 N 1.31513 * 119.99855 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00112 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47097 * 120.00385 * 9 7 5 12 12 H 1.48498 * 109.47068 * 240.00251 * 9 7 5 13 13 C 1.50701 * 109.47034 * 64.99767 * 3 2 1 14 14 C 1.38255 * 119.99820 * 59.99872 * 13 3 2 15 15 C 1.38220 * 119.99681 * 179.97438 * 14 13 3 16 16 C 1.38254 * 120.00044 * 0.09566 * 15 14 13 17 17 C 1.38204 * 119.99840 * 359.86143 * 16 15 14 18 18 C 1.50708 * 119.99830 * 180.02562 * 17 16 15 19 19 C 1.38207 * 119.99822 * 239.97634 * 13 3 2 20 20 H 1.09006 * 109.47181 * 60.00277 * 1 2 3 21 21 H 1.09000 * 109.46823 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47782 * 299.99871 * 1 2 3 23 23 H 1.08992 * 109.47333 * 239.99840 * 2 1 3 24 24 H 1.08996 * 109.47195 * 119.99794 * 2 1 3 25 25 H 0.96996 * 119.99976 * 179.97438 * 8 7 5 26 26 H 1.08000 * 120.00604 * 359.70329 * 14 13 3 27 27 H 1.08002 * 119.99604 * 180.02562 * 15 14 13 28 28 H 1.07997 * 119.99709 * 179.97438 * 16 15 14 29 29 H 1.08998 * 109.46762 * 270.01866 * 18 17 16 30 30 H 1.08993 * 109.46950 * 30.01550 * 18 17 16 31 31 H 1.09003 * 109.47184 * 150.02098 * 18 17 16 32 32 H 1.07991 * 120.00421 * 0.02562 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8890 0.6525 7 6 4.1433 0.8785 -1.2278 8 7 3.4063 0.3375 -2.1732 9 14 6.0050 0.8814 -1.3815 10 1 6.5986 1.5475 -0.1945 11 1 6.4971 -0.5173 -1.4627 12 1 6.3991 1.6169 -2.6099 13 6 1.6412 2.1163 1.2877 14 6 2.0766 1.6081 2.4974 15 6 1.7113 2.2263 3.6784 16 6 0.9088 3.3518 3.6501 17 6 0.4743 3.8603 2.4406 18 6 -0.4000 5.0875 2.4097 19 6 0.8405 3.2425 1.2592 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8294 -0.0603 -2.9501 26 1 2.6986 0.7254 2.5200 27 1 2.0518 1.8295 4.6234 28 1 0.6230 3.8346 4.5729 29 1 -1.4473 4.7885 2.4531 30 1 -0.1673 5.7210 3.2655 31 1 -0.2178 5.6402 1.4881 32 1 0.5003 3.6395 0.3143 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084332547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:43 Heat of formation + Delta-G solvation = -16.808538 kcal Electronic energy + Delta-G solvation = -13007.015298 eV Core-core repulsion = 10930.759757 eV Total energy + Delta-G solvation = -2076.255541 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.30344 -36.84478 -33.90521 -33.06350 -31.47198 -28.86713 -27.48318 -25.23822 -23.02360 -22.70865 -20.43010 -18.29129 -17.36827 -16.59144 -16.09155 -15.52060 -14.97607 -14.67521 -14.41585 -14.01214 -13.75658 -13.39759 -13.14784 -12.91901 -12.87182 -12.67341 -12.47325 -12.22567 -11.95679 -11.70543 -11.51792 -11.03771 -10.93297 -10.43040 -9.48611 -9.19651 -8.09427 -6.23536 0.65661 0.74096 1.38273 1.40492 1.51903 2.42011 3.07718 3.17936 4.10091 4.16141 4.31001 4.46410 4.53134 4.60446 4.67882 4.77262 4.83963 4.90380 5.00818 5.02786 5.17699 5.28120 5.34743 5.47998 5.50977 5.62833 5.73836 5.78028 5.84035 6.09675 6.17255 6.36716 6.43139 6.85459 7.43635 8.94174 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.035299 B = 0.009948 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.028995 B = 2813.954707 C = 3077.609598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C 0.078 3.922 4 H -0.001 1.001 5 C -0.522 4.522 6 H 0.047 0.953 7 C 0.014 3.986 8 N -0.914 5.914 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.280 1.280 13 C -0.048 4.048 14 C -0.139 4.139 15 C -0.119 4.119 16 C -0.145 4.145 17 C -0.093 4.093 18 C -0.106 4.106 19 C -0.151 4.151 20 H 0.038 0.962 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.105 0.895 27 H 0.140 0.860 28 H 0.146 0.854 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 4.730 9.198 11.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.060 3.940 4 H 0.018 0.982 5 C -0.560 4.560 6 H 0.065 0.935 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.206 1.206 13 C -0.048 4.048 14 C -0.157 4.157 15 C -0.137 4.137 16 C -0.163 4.163 17 C -0.093 4.093 18 C -0.163 4.163 19 C -0.169 4.169 20 H 0.058 0.942 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.123 0.877 27 H 0.158 0.842 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.643 4.648 9.027 11.617 hybrid contribution 1.161 -0.310 -0.697 1.390 sum -4.482 4.339 8.330 10.407 Atomic orbital electron populations 1.21692 0.96689 1.00533 1.00237 1.21434 0.93960 0.98422 1.00682 1.17769 0.94432 0.92521 0.89283 0.98238 1.21445 0.92172 1.37193 1.05172 0.93474 1.25704 1.02296 0.95004 0.95442 1.70012 1.36291 1.39251 1.09833 0.85584 0.80764 0.77857 0.77956 1.19493 1.20318 1.20605 1.20380 0.93731 0.94576 0.96163 1.21028 1.01207 1.00876 0.92593 1.21367 0.98226 0.96325 0.97800 1.21185 0.99923 0.97369 0.97799 1.20222 0.98549 0.97866 0.92665 1.20784 0.98519 0.93716 1.03244 1.21072 1.00735 0.97003 0.98128 0.94248 0.92752 0.93614 0.91670 0.94963 0.92930 0.87696 0.84223 0.83583 0.90255 0.89903 0.91842 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 9.73 71.98 0.70 -4.80 16 2 C -0.11 -5.25 5.14 30.60 0.16 -5.09 16 3 C 0.08 4.07 1.95 -12.28 -0.02 4.05 16 4 H 0.00 -0.03 7.88 -2.39 -0.02 -0.05 16 5 C -0.52 -29.48 8.24 25.60 0.21 -29.27 16 6 H 0.05 2.69 7.60 -2.91 -0.02 2.66 16 7 C 0.01 0.79 5.29 84.66 0.45 1.24 16 8 N -0.91 -53.16 11.29 21.45 0.24 -52.92 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C -0.05 -2.17 3.72 -19.87 -0.07 -2.24 16 14 C -0.14 -5.67 8.66 22.27 0.19 -5.48 16 15 C -0.12 -3.90 10.05 22.27 0.22 -3.67 16 16 C -0.15 -4.27 9.70 22.27 0.22 -4.06 16 17 C -0.09 -2.97 5.88 -19.86 -0.12 -3.08 16 18 C -0.11 -2.44 10.01 71.24 0.71 -1.73 16 19 C -0.15 -5.99 9.33 22.27 0.21 -5.79 16 20 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.04 1.78 7.38 -2.39 -0.02 1.76 16 23 H 0.06 3.58 5.95 -2.39 -0.01 3.57 16 24 H 0.03 1.54 7.22 -2.39 -0.02 1.52 16 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.10 4.45 7.54 -2.91 -0.02 4.43 16 27 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 28 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 31 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 32 H 0.11 4.20 7.94 -2.91 -0.02 4.18 16 Total: -1.00 -61.71 266.38 6.20 -55.51 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.07 Total: 10.94 kcal Atomic # 6 Polarization: -62.77 SS G_CDS: 2.86 Total: -59.92 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.24 Total: -52.92 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.71 6.20 -55.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.702 kcal (2) G-P(sol) polarization free energy of solvation -61.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds