Wall clock time and date at job start Mon Mar 30 2020 01:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46878 * 2 1 4 4 H 1.08996 * 109.47167 * 305.63224 * 3 2 1 5 5 C 1.50704 * 109.46822 * 185.63073 * 3 2 1 6 6 H 1.07997 * 120.00336 * 275.22969 * 5 3 2 7 7 C 1.37882 * 119.99730 * 95.22812 * 5 3 2 8 8 N 1.31509 * 119.99995 * 183.86473 * 7 5 3 9 9 Si 1.86803 * 119.99959 * 3.86713 * 7 5 3 10 10 H 1.48495 * 109.47518 * 84.94998 * 9 7 5 11 11 H 1.48504 * 109.46890 * 204.95425 * 9 7 5 12 12 H 1.48505 * 109.47055 * 324.94652 * 9 7 5 13 13 C 1.50699 * 109.46826 * 65.63340 * 3 2 1 14 14 C 1.38237 * 119.99961 * 59.72728 * 13 3 2 15 15 C 1.38240 * 119.99412 * 179.78186 * 14 13 3 16 16 C 1.38234 * 120.00236 * 0.44507 * 15 14 13 17 17 C 1.50700 * 119.99900 * 179.83009 * 16 15 14 18 18 C 1.38227 * 120.00059 * 359.80856 * 16 15 14 19 19 C 1.38232 * 119.99792 * 239.99248 * 13 3 2 20 20 H 1.09003 * 109.47088 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46834 * 299.99846 * 1 2 3 22 22 H 1.08994 * 109.47295 * 59.99659 * 1 2 3 23 23 H 1.08995 * 109.47038 * 119.99856 * 2 1 3 24 24 H 1.08995 * 109.46767 * 240.00289 * 2 1 3 25 25 H 0.96999 * 120.00222 * 180.02562 * 8 7 5 26 26 H 1.07997 * 120.00146 * 359.97438 * 14 13 3 27 27 H 1.08003 * 119.99259 * 180.27342 * 15 14 13 28 28 H 1.08998 * 109.47281 * 269.97623 * 17 16 15 29 29 H 1.09003 * 109.46984 * 29.97763 * 17 16 15 30 30 H 1.08997 * 109.46942 * 149.97605 * 17 16 15 31 31 H 1.08005 * 120.00451 * 180.02562 * 18 16 15 32 32 H 1.08005 * 120.00007 * 359.97438 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5966 1.9847 -0.8352 5 6 3.5406 1.4449 -0.1394 6 1 4.1643 1.3300 0.7347 7 6 4.1171 1.5935 -1.3830 8 7 5.4234 1.5195 -1.5153 9 14 3.0427 1.9002 -2.8800 10 1 2.7567 3.3528 -2.9951 11 1 3.7504 1.4368 -4.1006 12 1 1.7667 1.1545 -2.7346 13 6 1.6547 2.1115 1.2943 14 6 2.0981 1.5956 2.4977 15 6 1.7483 2.2119 3.6846 16 6 0.9477 3.3386 3.6687 17 6 0.5633 4.0082 4.9629 18 6 0.5000 3.8514 2.4656 19 6 0.8534 3.2378 1.2784 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 5.8291 1.6245 -2.3901 26 1 2.7202 0.7129 2.5103 27 1 2.0984 1.8113 4.6246 28 1 -0.3664 3.5762 5.3333 29 1 1.3530 3.8568 5.6988 30 1 0.4252 5.0759 4.7925 31 1 -0.1252 4.7320 2.4530 32 1 0.5038 3.6386 0.3383 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084332555.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:52 Heat of formation + Delta-G solvation = -2.921190 kcal Electronic energy + Delta-G solvation = -12986.524014 eV Core-core repulsion = 10910.870674 eV Total energy + Delta-G solvation = -2075.653340 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90595 -35.29838 -32.15689 -31.37500 -30.24966 -28.21981 -25.68332 -22.76515 -22.15818 -21.01628 -19.10984 -16.89933 -15.63202 -14.67310 -14.53334 -14.09818 -13.56300 -13.33256 -12.81240 -12.73843 -12.62871 -12.12829 -11.71638 -11.67617 -11.44132 -11.03013 -10.88372 -10.44704 -10.26755 -10.10130 -9.75418 -9.52315 -9.11907 -8.54611 -8.24699 -7.64018 -6.09279 -4.07956 2.07666 2.09871 3.27760 3.36095 3.37835 4.40207 4.47769 5.22883 5.33178 5.34017 5.60167 5.68164 5.80485 5.86415 5.97608 5.99769 6.07341 6.15426 6.25062 6.32700 6.51502 6.64873 6.69928 6.83977 6.96393 7.04722 7.15869 7.17460 7.34659 7.57879 7.74935 7.77308 8.50467 8.95976 9.52762 11.03757 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.037525 B = 0.010163 C = 0.009557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.986299 B = 2754.405960 C = 2928.982994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C 0.044 3.956 4 H 0.037 0.963 5 C -0.505 4.505 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.262 1.262 13 C -0.025 4.025 14 C -0.108 4.108 15 C -0.123 4.123 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.122 4.122 19 C -0.132 4.132 20 H 0.039 0.961 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.264 0.736 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 1.750 6.951 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C 0.025 3.975 4 H 0.056 0.944 5 C -0.542 4.542 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.187 1.187 13 C -0.026 4.026 14 C -0.126 4.126 15 C -0.141 4.141 16 C -0.121 4.121 17 C -0.161 4.161 18 C -0.141 4.141 19 C -0.150 4.150 20 H 0.058 0.942 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.138 0.862 27 H 0.128 0.872 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.877 1.759 6.813 12.127 hybrid contribution -0.339 0.255 -0.938 1.029 sum -10.216 2.014 5.875 11.956 Atomic orbital electron populations 1.21887 0.98357 0.99883 1.00892 1.21818 0.92711 0.99264 1.01242 1.18374 0.97120 0.91702 0.90295 0.94448 1.20963 0.88431 1.49837 0.95009 0.90579 1.25041 0.94791 0.94530 0.98652 1.69891 1.09623 1.49981 1.24150 0.86916 0.81287 0.79125 0.82652 1.20172 1.21522 1.18681 1.20333 0.91967 0.93803 0.96452 1.20999 0.99537 1.00385 0.91708 1.20927 0.99207 0.96143 0.97807 1.19660 1.00447 0.97255 0.94739 1.20669 1.00962 0.99706 0.94810 1.20840 1.01036 0.99858 0.92317 1.21048 0.99738 0.96864 0.97345 0.94194 0.93281 0.93758 0.92783 0.92602 0.92604 0.86212 0.87187 0.92143 0.92216 0.92299 0.87289 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.73 37.16 0.36 -2.35 16 2 C -0.11 -2.35 5.28 -26.73 -0.14 -2.49 16 3 C 0.04 1.02 1.60 -92.92 -0.15 0.87 16 4 H 0.04 0.88 5.06 -51.93 -0.26 0.62 16 5 C -0.50 -13.95 8.64 -34.44 -0.30 -14.25 16 6 H 0.08 2.29 7.66 -52.49 -0.40 1.88 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 9 Si 0.87 21.37 26.97 -169.99 -4.58 16.78 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.10 6.85 56.52 0.39 -5.71 16 13 C -0.03 -0.54 3.78 -104.63 -0.40 -0.93 16 14 C -0.11 -2.15 8.54 -39.58 -0.34 -2.49 16 15 C -0.12 -2.12 9.70 -39.58 -0.38 -2.50 16 16 C -0.12 -1.96 5.88 -104.63 -0.62 -2.57 16 17 C -0.10 -1.29 10.01 36.01 0.36 -0.93 16 18 C -0.12 -2.06 9.70 -39.58 -0.38 -2.45 16 19 C -0.13 -2.53 9.67 -39.58 -0.38 -2.91 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.85 7.40 -51.93 -0.38 0.46 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 1.10 7.19 -51.93 -0.37 0.72 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.12 2.39 7.46 -52.49 -0.39 2.00 16 27 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.11 2.02 7.95 -52.48 -0.42 1.60 16 LS Contribution 265.89 15.07 4.01 4.01 Total: -1.00 -29.53 265.89 -7.02 -36.55 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.76 Total: 0.25 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: -2.46 Total: -31.05 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.77 Total: -26.54 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.58 Total: 16.78 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.53 -7.02 -36.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332555.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.630 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds