Wall clock time and date at job start Mon Mar 30 2020 02:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86806 * 120.00173 * 2 1 4 4 H 1.48500 * 109.46975 * 239.99695 * 3 2 1 5 5 H 1.48496 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46969 * 119.99935 * 3 2 1 7 7 C 1.38844 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00155 * 190.53925 * 7 2 1 9 9 N 1.37185 * 120.00037 * 10.53357 * 7 2 1 10 10 C 1.36975 * 125.08873 * 21.46495 * 9 7 2 11 11 C 1.34323 * 109.91785 * 179.97438 * 10 9 7 12 12 C 1.46660 * 107.05370 * 359.97438 * 11 10 9 13 13 C 1.39572 * 133.95040 * 180.02562 * 12 11 10 14 14 C 1.37775 * 119.70518 * 179.97438 * 13 12 11 15 15 C 1.38726 * 120.38871 * 359.97362 * 14 13 12 16 16 C 1.38131 * 120.61381 * 0.04957 * 15 14 13 17 17 F 1.35099 * 120.06153 * 179.97438 * 16 15 14 18 18 C 1.38146 * 125.09700 * 201.15602 * 9 7 2 19 19 H 0.97000 * 119.99789 * 0.02562 * 1 2 3 20 20 H 1.07990 * 125.04464 * 359.96464 * 10 9 7 21 21 H 1.08006 * 126.46866 * 180.02562 * 11 10 9 22 22 H 1.08004 * 120.14430 * 359.95030 * 13 12 11 23 23 H 1.07996 * 119.80581 * 180.02562 * 14 13 12 24 24 H 1.07993 * 119.69418 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 3.1023 1.6963 -1.2125 5 1 1.2836 2.7465 -0.0006 6 1 3.1022 1.6964 1.2125 7 6 2.0087 -1.2024 0.0005 8 1 3.0750 -1.2102 0.1716 9 7 1.3401 -2.3806 -0.2161 10 6 0.1256 -2.4936 -0.8393 11 6 -0.2454 -3.7837 -0.8881 12 6 0.8181 -4.5617 -0.2443 13 6 1.0069 -5.9215 0.0071 14 6 2.1488 -6.3446 0.6516 15 6 3.1101 -5.4274 1.0506 16 6 2.9380 -4.0782 0.8097 17 9 3.8811 -3.1947 1.2035 18 6 1.7936 -3.6312 0.1561 19 1 -0.4850 0.8401 -0.0004 20 1 -0.4487 -1.6680 -1.2329 21 1 -1.1548 -4.1742 -1.3206 22 1 0.2610 -6.6389 -0.3019 23 1 2.2968 -7.3964 0.8465 24 1 4.0011 -5.7714 1.5545 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107838108.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:32 Heat of formation + Delta-G solvation = 7.340935 kcal Electronic energy + Delta-G solvation = -12711.728951 eV Core-core repulsion = 10311.801299 eV Total energy + Delta-G solvation = -2399.927652 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.88043 -39.96192 -36.10383 -33.17037 -30.67103 -28.56373 -27.87300 -24.84095 -21.63362 -20.91088 -19.87651 -17.95497 -16.06054 -15.62167 -15.07964 -14.79650 -14.67010 -13.94606 -13.70945 -13.10349 -12.51356 -12.01711 -11.85137 -11.40498 -11.30026 -10.94950 -10.77727 -10.63224 -10.31186 -10.26593 -9.25653 -8.49617 -7.21166 -6.93908 -6.64488 -4.34598 1.97617 2.47485 3.00605 3.02133 3.05446 3.77915 3.95953 4.66094 4.68080 4.91613 5.29169 5.69851 5.77719 6.07988 6.25702 6.36045 6.80868 6.86538 6.93119 7.07738 7.10415 7.21968 7.46308 7.57068 7.92208 8.03540 8.41318 8.89904 9.31296 10.22876 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.044285 B = 0.012411 C = 0.009859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.119786 B = 2255.440685 C = 2839.483595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.341 4.341 8 H 0.111 0.889 9 N -0.278 5.278 10 C 0.084 3.916 11 C -0.277 4.277 12 C -0.102 4.102 13 C -0.089 4.089 14 C -0.152 4.152 15 C -0.175 4.175 16 C 0.105 3.895 17 F -0.150 7.150 18 C 0.013 3.987 19 H 0.281 0.719 20 H 0.174 0.826 21 H 0.128 0.872 22 H 0.110 0.890 23 H 0.113 0.887 24 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 -3.967 -0.471 4.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.128 0.872 9 N 0.061 4.939 10 C -0.051 4.051 11 C -0.301 4.301 12 C -0.108 4.108 13 C -0.108 4.108 14 C -0.172 4.172 15 C -0.196 4.196 16 C 0.084 3.916 17 F -0.129 7.129 18 C -0.099 4.099 19 H 0.092 0.908 20 H 0.191 0.809 21 H 0.146 0.854 22 H 0.129 0.871 23 H 0.131 0.869 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.695 -3.398 -0.396 3.818 hybrid contribution 0.448 0.981 0.199 1.097 sum 2.143 -2.417 -0.197 3.236 Atomic orbital electron populations 1.69880 1.06282 1.29131 1.43029 1.25534 0.95763 1.00645 0.94617 0.85736 0.79030 0.78870 0.79733 1.19079 1.20143 1.19108 1.20025 0.94246 0.81960 1.50583 0.87155 1.40221 1.14406 1.03170 1.36145 1.22155 0.88294 0.97207 0.97456 1.21311 1.01099 0.92337 1.15366 1.18883 0.95313 0.92125 1.04526 1.20309 0.97207 0.93474 0.99819 1.20295 0.95064 0.97953 1.03855 1.20402 1.01529 0.90355 1.07270 1.16752 0.86179 0.86786 1.01868 1.91390 1.63522 1.68720 1.89229 1.18331 0.97167 0.87368 1.07072 0.90839 0.80937 0.85364 0.87149 0.86861 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.06 10.85 55.49 0.60 -21.45 14 2 C 0.04 1.09 5.35 -17.49 -0.09 1.00 14 3 Si 0.94 19.44 29.56 -169.99 -5.03 14.41 14 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 14 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 14 6 H -0.27 -5.48 7.11 56.52 0.40 -5.07 14 7 C -0.34 -9.24 9.70 -14.93 -0.14 -9.39 14 8 H 0.11 2.95 6.81 -52.49 -0.36 2.60 14 9 N -0.28 -7.54 2.92 -59.70 -0.17 -7.71 14 10 C 0.08 2.14 9.89 -16.64 -0.16 1.98 14 11 C -0.28 -6.43 11.09 -37.57 -0.42 -6.85 14 12 C -0.10 -2.40 6.37 -105.10 -0.67 -3.07 14 13 C -0.09 -1.77 10.10 -39.25 -0.40 -2.17 14 14 C -0.15 -2.79 10.03 -39.57 -0.40 -3.18 14 15 C -0.17 -3.48 10.00 -39.44 -0.39 -3.87 14 16 C 0.11 2.48 7.32 -39.28 -0.29 2.20 14 17 F -0.15 -3.57 15.90 2.25 0.04 -3.54 14 18 C 0.01 0.34 6.76 -83.77 -0.57 -0.23 14 19 H 0.28 6.71 8.31 -40.82 -0.34 6.37 14 20 H 0.17 4.36 6.35 -52.49 -0.33 4.02 14 21 H 0.13 2.55 8.06 -52.48 -0.42 2.13 14 22 H 0.11 1.85 8.06 -52.48 -0.42 1.42 14 23 H 0.11 1.66 8.06 -52.49 -0.42 1.24 14 24 H 0.12 1.99 8.06 -52.49 -0.42 1.57 14 LS Contribution 220.85 15.07 3.33 3.33 Total: -1.00 -28.09 220.85 -6.28 -34.37 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -1.52 Total: 4.17 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -3.53 Total: -23.58 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 0.43 Total: -29.16 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -28.09 -6.28 -34.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107838108.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.714 kcal (2) G-P(sol) polarization free energy of solvation -28.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds