Wall clock time and date at job start Mon Mar 30 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86797 * 120.00127 * 2 1 4 4 H 1.48502 * 109.47674 * 240.00189 * 3 2 1 5 5 H 1.48500 * 109.46910 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47034 * 120.00009 * 3 2 1 7 7 C 1.38884 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00094 * 199.61743 * 7 2 1 9 9 N 1.37358 * 120.00035 * 19.60883 * 7 2 1 10 10 C 1.36929 * 126.41574 * 31.65900 * 9 7 2 11 11 O 1.35231 * 125.05601 * 0.02562 * 10 9 7 12 12 N 1.30917 * 109.88844 * 179.97438 * 10 9 7 13 13 C 1.35413 * 109.70612 * 359.97438 * 12 10 9 14 14 C 1.39881 * 134.61465 * 180.02562 * 13 12 10 15 15 C 1.36728 * 118.83702 * 179.97438 * 14 13 12 16 16 N 1.32215 * 121.45559 * 0.02889 * 15 14 13 17 17 C 1.31993 * 122.28013 * 359.97195 * 16 15 14 18 18 C 1.38333 * 120.23071 * 359.71181 * 17 16 15 19 19 H 0.97000 * 119.99972 * 359.97438 * 1 2 3 20 20 H 0.96701 * 113.99748 * 90.00325 * 11 10 9 21 21 H 1.08004 * 120.57680 * 359.95622 * 14 13 12 22 22 H 1.08005 * 119.27611 * 179.97438 * 15 14 13 23 23 H 1.07997 * 119.88192 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0086 -1.2027 -0.0005 8 1 3.0416 -1.2300 0.3135 9 7 1.3816 -2.3577 -0.4003 10 6 0.3899 -2.4612 -1.3387 11 8 -0.1358 -1.4252 -2.0308 12 7 0.0271 -3.7126 -1.4671 13 6 0.7551 -4.4874 -0.6284 14 6 0.7987 -5.8564 -0.3448 15 6 1.6873 -6.3080 0.5911 16 7 2.4987 -5.4808 1.2279 17 6 2.5004 -4.1807 1.0003 18 6 1.6389 -3.6362 0.0649 19 1 -0.4850 0.8400 0.0004 20 1 0.3197 -1.2364 -2.8627 21 1 0.1418 -6.5446 -0.8561 22 1 1.7267 -7.3637 0.8159 23 1 3.1798 -3.5403 1.5432 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108265704.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:12 Heat of formation + Delta-G solvation = 46.582607 kcal Electronic energy + Delta-G solvation = -12877.356081 eV Core-core repulsion = 10499.050037 eV Total energy + Delta-G solvation = -2378.306044 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.06803 -37.80239 -35.70737 -34.18981 -31.83386 -29.75331 -28.62611 -25.51778 -22.51748 -21.79742 -20.69511 -18.58005 -16.84210 -16.66004 -15.64508 -15.29045 -14.58244 -14.30911 -13.61097 -13.36034 -13.03941 -12.24211 -11.89620 -11.47720 -11.27305 -11.19787 -10.81671 -10.63339 -10.03406 -9.11519 -9.00705 -8.68100 -7.60318 -7.52021 -6.93924 -4.63919 1.73662 2.41850 2.92255 2.94722 2.97916 3.62746 3.69616 4.07546 4.58132 4.85300 4.96721 5.30919 5.61827 5.98538 6.14109 6.29464 6.39057 6.66330 6.91798 7.07364 7.32012 7.59270 7.89523 8.17739 8.49723 8.85337 9.02775 9.20770 10.08243 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.048582 B = 0.012191 C = 0.010140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.202543 B = 2296.278323 C = 2760.660848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.058 3.942 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.369 4.369 8 H 0.112 0.888 9 N -0.272 5.272 10 C 0.423 3.577 11 O -0.415 6.415 12 N -0.535 5.535 13 C 0.075 3.925 14 C -0.132 4.132 15 C 0.044 3.956 16 N -0.504 5.504 17 C 0.154 3.846 18 C -0.052 4.052 19 H 0.286 0.714 20 H 0.377 0.623 21 H 0.122 0.878 22 H 0.143 0.857 23 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 -0.844 -1.576 3.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.159 4.159 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.130 0.870 9 N 0.048 4.952 10 C 0.124 3.876 11 O -0.212 6.212 12 N -0.268 5.268 13 C -0.058 4.058 14 C -0.154 4.154 15 C -0.104 4.104 16 N -0.217 5.217 17 C -0.015 4.015 18 C -0.170 4.170 19 H 0.096 0.904 20 H 0.231 0.769 21 H 0.140 0.860 22 H 0.161 0.839 23 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.520 -1.095 -1.099 2.959 hybrid contribution 0.457 1.667 -0.479 1.794 sum 2.977 0.572 -1.578 3.418 Atomic orbital electron populations 1.69905 1.06570 1.29903 1.35262 1.25614 0.95383 1.00732 0.94190 0.85846 0.79251 0.79073 0.79820 1.18960 1.20130 1.19003 1.19775 0.97211 0.82929 1.49808 0.86999 1.41809 1.24467 1.04628 1.24307 1.20224 0.90862 0.85536 0.90970 1.84941 1.53863 1.46476 1.35914 1.70354 1.29582 0.99395 1.27507 1.18758 0.95409 0.93904 0.97732 1.20649 1.01656 0.92367 1.00754 1.21692 0.94522 0.98758 0.95437 1.67685 1.24113 1.02901 1.26959 1.21467 0.95687 0.90849 0.93484 1.19811 1.05311 0.87243 1.04644 0.90363 0.76935 0.86006 0.83925 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.22 11.05 55.49 0.61 -19.61 14 2 C 0.06 1.37 4.88 -17.49 -0.09 1.29 14 3 Si 0.94 17.78 29.59 -169.99 -5.03 12.75 14 4 H -0.26 -4.92 7.11 56.52 0.40 -4.51 14 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 14 6 H -0.27 -4.97 7.11 56.52 0.40 -4.57 14 7 C -0.37 -9.15 9.96 -14.84 -0.15 -9.30 14 8 H 0.11 2.59 7.90 -52.49 -0.41 2.17 14 9 N -0.27 -7.02 2.89 -61.01 -0.18 -7.19 14 10 C 0.42 10.87 8.27 -88.28 -0.73 10.14 14 11 O -0.42 -9.69 10.99 -17.39 -0.19 -9.88 14 12 N -0.53 -13.78 11.29 -12.03 -0.14 -13.91 14 13 C 0.08 1.84 7.29 -84.65 -0.62 1.22 14 14 C -0.13 -2.70 10.12 -39.51 -0.40 -3.10 14 15 C 0.04 0.84 11.10 -17.93 -0.20 0.64 14 16 N -0.50 -10.49 10.35 -13.48 -0.14 -10.63 14 17 C 0.15 3.37 11.21 -17.45 -0.20 3.17 14 18 C -0.05 -1.28 6.84 -83.81 -0.57 -1.86 14 19 H 0.29 6.78 8.31 -40.82 -0.34 6.44 14 20 H 0.38 6.71 9.06 45.56 0.41 7.13 14 21 H 0.12 2.16 8.06 -52.48 -0.42 1.73 14 22 H 0.14 2.14 8.06 -52.48 -0.42 1.72 14 23 H 0.14 2.84 8.06 -52.49 -0.42 2.42 14 LS Contribution 216.60 15.07 3.26 3.26 Total: -1.00 -30.12 216.60 -5.15 -35.27 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -0.41 Total: 7.72 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.95 Total: 2.22 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.16 Total: -51.34 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.19 Total: -9.88 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -30.12 -5.15 -35.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108265704.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.855 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds