Wall clock time and date at job start Mon Mar 30 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86797 * 120.00127 * 2 1 4 4 H 1.48502 * 109.47674 * 240.00189 * 3 2 1 5 5 H 1.48500 * 109.46910 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47034 * 120.00009 * 3 2 1 7 7 C 1.38884 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00094 * 199.61743 * 7 2 1 9 9 N 1.37358 * 120.00035 * 19.60883 * 7 2 1 10 10 C 1.36929 * 126.41574 * 31.65900 * 9 7 2 11 11 O 1.35231 * 125.05601 * 0.02562 * 10 9 7 12 12 N 1.30917 * 109.88844 * 179.97438 * 10 9 7 13 13 C 1.35413 * 109.70612 * 359.97438 * 12 10 9 14 14 C 1.39881 * 134.61465 * 180.02562 * 13 12 10 15 15 C 1.36728 * 118.83702 * 179.97438 * 14 13 12 16 16 N 1.32215 * 121.45559 * 0.02889 * 15 14 13 17 17 C 1.31993 * 122.28013 * 359.97195 * 16 15 14 18 18 C 1.38333 * 120.23071 * 359.71181 * 17 16 15 19 19 H 0.97000 * 119.99972 * 359.97438 * 1 2 3 20 20 H 0.96701 * 113.99748 * 90.00325 * 11 10 9 21 21 H 1.08004 * 120.57680 * 359.95622 * 14 13 12 22 22 H 1.08005 * 119.27611 * 179.97438 * 15 14 13 23 23 H 1.07997 * 119.88192 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0086 -1.2027 -0.0005 8 1 3.0416 -1.2300 0.3135 9 7 1.3816 -2.3577 -0.4003 10 6 0.3899 -2.4612 -1.3387 11 8 -0.1358 -1.4252 -2.0308 12 7 0.0271 -3.7126 -1.4671 13 6 0.7551 -4.4874 -0.6284 14 6 0.7987 -5.8564 -0.3448 15 6 1.6873 -6.3080 0.5911 16 7 2.4987 -5.4808 1.2279 17 6 2.5004 -4.1807 1.0003 18 6 1.6389 -3.6362 0.0649 19 1 -0.4850 0.8400 0.0004 20 1 0.3197 -1.2364 -2.8627 21 1 0.1418 -6.5446 -0.8561 22 1 1.7267 -7.3637 0.8159 23 1 3.1798 -3.5403 1.5432 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108265704.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:12 Heat of formation + Delta-G solvation = 23.157608 kcal Electronic energy + Delta-G solvation = -12878.371865 eV Core-core repulsion = 10499.050037 eV Total energy + Delta-G solvation = -2379.321828 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.86123 -39.51076 -37.49042 -36.00462 -33.63743 -31.45171 -30.38006 -27.35301 -24.27148 -23.51170 -22.52313 -20.38000 -18.58085 -18.44853 -17.44677 -17.03972 -16.24039 -16.02055 -15.30684 -15.02167 -14.71682 -13.90896 -13.65189 -13.13741 -12.94510 -12.88736 -12.49634 -12.16782 -11.78403 -10.91238 -10.79023 -10.39891 -9.34154 -9.32121 -8.72515 -6.52292 0.02079 0.71177 1.38097 1.43770 1.53562 1.91515 1.98783 2.33816 2.79440 3.14773 3.22719 3.72415 3.96628 4.34187 4.43403 4.64759 4.75917 4.99336 5.13562 5.35468 5.63687 5.93873 6.07634 6.42676 6.72078 7.12342 7.24514 7.39026 8.31284 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.048582 B = 0.012191 C = 0.010140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.202543 B = 2296.278323 C = 2760.660848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.022 3.978 3 Si 1.013 2.987 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.395 4.395 8 H 0.121 0.879 9 N -0.285 5.285 10 C 0.405 3.595 11 O -0.424 6.424 12 N -0.557 5.557 13 C 0.049 3.951 14 C -0.136 4.136 15 C 0.057 3.943 16 N -0.503 5.503 17 C 0.148 3.852 18 C -0.081 4.081 19 H 0.289 0.711 20 H 0.396 0.604 21 H 0.150 0.850 22 H 0.192 0.808 23 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -1.263 -1.160 4.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.191 4.191 3 Si 0.832 3.168 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.523 4.523 8 H 0.139 0.861 9 N 0.034 4.966 10 C 0.106 3.894 11 O -0.223 6.223 12 N -0.292 5.292 13 C -0.083 4.083 14 C -0.158 4.158 15 C -0.091 4.091 16 N -0.214 5.214 17 C -0.021 4.021 18 C -0.198 4.198 19 H 0.099 0.901 20 H 0.252 0.748 21 H 0.168 0.832 22 H 0.209 0.791 23 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.543 -1.539 -0.688 3.923 hybrid contribution 0.135 1.639 -0.585 1.745 sum 3.678 0.100 -1.273 3.893 Atomic orbital electron populations 1.70008 1.08416 1.30964 1.36535 1.26629 0.95942 1.03833 0.92723 0.84719 0.77775 0.74038 0.80224 1.17997 1.19955 1.18207 1.20250 0.97885 0.83418 1.50707 0.86115 1.42000 1.24795 1.05273 1.24578 1.20464 0.91373 0.85942 0.91637 1.84872 1.54411 1.46063 1.37000 1.70305 1.30514 0.99796 1.28612 1.19391 0.95554 0.95563 0.97829 1.21056 1.02426 0.91154 1.01170 1.22462 0.92510 1.00607 0.93554 1.67805 1.24310 1.02443 1.26878 1.21746 0.95573 0.91607 0.93133 1.20284 1.06469 0.87202 1.05831 0.90114 0.74752 0.83220 0.79096 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.04 11.05 21.65 0.24 -42.80 14 2 C 0.02 1.03 4.88 84.91 0.41 1.45 14 3 Si 1.01 35.82 29.59 68.60 2.03 37.85 14 4 H -0.26 -8.61 7.11 99.48 0.71 -7.90 14 5 H -0.27 -9.54 7.11 99.48 0.71 -8.84 14 6 H -0.26 -8.75 7.11 99.48 0.71 -8.04 14 7 C -0.39 -19.69 9.96 83.98 0.84 -18.86 14 8 H 0.12 5.57 7.90 -2.91 -0.02 5.55 14 9 N -0.29 -14.95 2.89 -457.57 -1.32 -16.27 14 10 C 0.40 21.25 8.27 179.53 1.48 22.74 14 11 O -0.42 -20.24 10.99 -85.14 -0.94 -21.17 14 12 N -0.56 -29.13 11.29 -305.74 -3.45 -32.58 14 13 C 0.05 2.39 7.29 39.65 0.29 2.68 14 14 C -0.14 -5.28 10.12 22.31 0.23 -5.06 14 15 C 0.06 1.97 11.10 84.28 0.94 2.90 14 16 N -0.50 -19.67 10.35 -196.57 -2.03 -21.71 14 17 C 0.15 6.34 11.21 84.69 0.95 7.29 14 18 C -0.08 -3.99 6.84 38.78 0.27 -3.73 14 19 H 0.29 13.82 8.31 -92.71 -0.77 13.05 14 20 H 0.40 14.45 9.06 -74.06 -0.67 13.78 14 21 H 0.15 4.87 8.06 -2.91 -0.02 4.85 14 22 H 0.19 4.72 8.06 -2.91 -0.02 4.70 14 23 H 0.16 6.15 8.06 -2.91 -0.02 6.12 14 Total: -1.00 -64.51 216.60 0.51 -64.00 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.59 Total: 23.27 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.40 Total: 9.42 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -6.57 Total: -113.36 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.94 Total: -21.17 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -64.51 0.51 -64.00 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108265704.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.156 kcal (2) G-P(sol) polarization free energy of solvation -64.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds