Wall clock time and date at job start Mon Mar 30 2020 02:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99530 * 2 1 4 4 H 1.48502 * 109.47257 * 275.35935 * 3 2 1 5 5 H 1.48507 * 109.47428 * 35.35859 * 3 2 1 6 6 H 1.48504 * 109.47255 * 155.35905 * 3 2 1 7 7 C 1.38872 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00288 * 335.81937 * 7 2 1 9 9 N 1.37410 * 120.00116 * 156.09298 * 7 2 1 10 10 C 1.37061 * 126.40817 * 140.88356 * 9 7 2 11 11 O 1.35290 * 125.05637 * 0.02562 * 10 9 7 12 12 N 1.30748 * 109.88437 * 180.02562 * 10 9 7 13 13 C 1.35867 * 109.66987 * 0.02562 * 12 10 9 14 14 C 1.39381 * 134.30047 * 180.02562 * 13 12 10 15 15 N 1.31737 * 120.29701 * 179.97438 * 14 13 12 16 16 C 1.32189 * 122.36038 * 0.02562 * 15 14 13 17 17 C 1.38025 * 121.20582 * 0.02562 * 16 15 14 18 18 C 1.38087 * 126.40473 * 320.57611 * 9 7 2 19 19 H 0.96999 * 120.00706 * 0.02562 * 1 2 3 20 20 H 0.96707 * 114.00026 * 90.15605 * 11 10 9 21 21 H 1.08005 * 119.85284 * 359.97438 * 14 13 12 22 22 H 1.07994 * 119.39812 * 179.97438 * 16 15 14 23 23 H 1.08008 * 120.59052 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3822 2.1119 -1.3940 5 1 1.5066 2.6174 0.8102 6 1 3.5976 1.4103 0.5837 7 6 2.0086 -1.2026 0.0005 8 1 1.5397 -2.0968 0.3841 9 7 3.2942 -1.2538 -0.4817 10 6 4.3315 -1.9802 0.0428 11 8 4.2500 -2.7741 1.1353 12 7 5.4114 -1.7919 -0.6698 13 6 5.1419 -0.9378 -1.6916 14 6 5.8943 -0.3978 -2.7331 15 7 5.3385 0.4283 -3.5958 16 6 4.0666 0.7803 -3.5196 17 6 3.2486 0.2941 -2.5198 18 6 3.7814 -0.5877 -1.5888 19 1 -0.4851 0.8400 -0.0004 20 1 4.0090 -3.6898 0.9390 21 1 6.9378 -0.6577 -2.8335 22 1 3.6603 1.4615 -4.2525 23 1 2.2107 0.5880 -2.4672 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108265706.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:14 Heat of formation + Delta-G solvation = 26.579400 kcal Electronic energy + Delta-G solvation = -13020.126543 eV Core-core repulsion = 10640.953095 eV Total energy + Delta-G solvation = -2379.173448 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.17781 -39.66478 -37.84451 -36.14004 -33.95268 -32.11660 -30.29781 -27.43690 -24.54431 -23.96320 -22.15004 -20.48562 -19.56394 -18.50459 -17.58830 -17.21306 -16.43547 -16.25168 -15.40888 -15.32515 -14.95989 -14.75026 -13.81731 -13.54262 -13.17376 -12.89282 -12.37329 -12.34599 -11.99284 -11.17859 -10.89589 -10.53726 -9.83573 -9.15941 -9.00976 -6.73136 -0.18600 0.55332 1.05432 1.14511 1.24522 1.57021 1.79850 1.92951 2.54698 2.91585 2.99345 3.62160 3.70357 4.10939 4.22860 4.44125 4.52682 4.90556 5.10754 5.37570 5.47545 5.69803 5.77142 6.31321 6.44157 6.83481 7.07824 7.12128 8.09766 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.028335 B = 0.020087 C = 0.013327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.955695 B = 1393.601173 C = 2100.569225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.215 1.215 5 H -0.262 1.262 6 H -0.294 1.294 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.318 5.318 10 C 0.385 3.615 11 O -0.441 6.441 12 N -0.510 5.510 13 C -0.026 4.026 14 C 0.165 3.835 15 N -0.494 5.494 16 C 0.072 3.928 17 C -0.160 4.160 18 C 0.019 3.981 19 H 0.298 0.702 20 H 0.417 0.583 21 H 0.188 0.812 22 H 0.191 0.809 23 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 0.972 -3.814 5.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.149 4.149 3 Si 0.728 3.272 4 H -0.138 1.138 5 H -0.187 1.187 6 H -0.220 1.220 7 C -0.504 4.504 8 H 0.124 0.876 9 N -0.002 5.002 10 C 0.085 3.915 11 O -0.244 6.244 12 N -0.244 5.244 13 C -0.152 4.152 14 C -0.004 4.004 15 N -0.205 5.205 16 C -0.076 4.076 17 C -0.182 4.182 18 C -0.102 4.102 19 H 0.109 0.891 20 H 0.276 0.724 21 H 0.205 0.795 22 H 0.208 0.792 23 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.131 1.485 -3.841 6.580 hybrid contribution -1.648 -0.155 1.090 1.982 sum 3.484 1.330 -2.751 4.634 Atomic orbital electron populations 1.69765 1.07223 1.31147 1.39169 1.25764 0.95619 1.01096 0.92443 0.86501 0.78398 0.80196 0.82088 1.13839 1.18739 1.21967 1.19201 0.85905 0.98816 1.46437 0.87582 1.41971 1.08683 1.32862 1.16727 1.20962 0.82708 0.97792 0.90014 1.84725 1.90439 1.25530 1.23675 1.70393 1.24552 1.21798 1.07650 1.20180 0.92959 1.02487 0.99540 1.22332 1.00129 0.91057 0.86841 1.67723 1.13085 1.13627 1.26031 1.22702 0.88781 0.99365 0.96787 1.21247 1.02020 0.98909 0.96059 1.19199 0.96543 1.02664 0.91755 0.89106 0.72357 0.79510 0.79218 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.28 13.96 21.65 0.30 -42.98 14 2 C 0.06 3.27 4.99 84.91 0.42 3.69 14 3 Si 0.91 40.57 24.53 68.60 1.68 42.25 14 4 H -0.22 -8.61 5.47 99.48 0.54 -8.07 14 5 H -0.26 -11.05 7.11 99.48 0.71 -10.34 14 6 H -0.29 -14.79 7.11 99.48 0.71 -14.09 14 7 C -0.38 -19.76 10.24 83.97 0.86 -18.90 14 8 H 0.11 5.76 8.06 -2.91 -0.02 5.74 14 9 N -0.32 -15.85 2.45 -457.34 -1.12 -16.97 14 10 C 0.38 17.87 8.95 179.54 1.61 19.47 14 11 O -0.44 -17.28 13.50 -85.75 -1.16 -18.43 14 12 N -0.51 -23.30 11.30 -305.90 -3.46 -26.76 14 13 C -0.03 -1.13 7.27 39.43 0.29 -0.85 14 14 C 0.17 6.08 11.26 84.98 0.96 7.04 14 15 N -0.49 -17.66 10.33 -194.92 -2.01 -19.68 14 16 C 0.07 2.52 11.17 84.59 0.94 3.46 14 17 C -0.16 -6.64 7.01 22.37 0.16 -6.48 14 18 C 0.02 0.87 5.32 38.95 0.21 1.08 14 19 H 0.30 13.82 8.31 -92.71 -0.77 13.05 14 20 H 0.42 11.30 9.06 -74.05 -0.67 10.63 14 21 H 0.19 5.48 8.06 -2.91 -0.02 5.45 14 22 H 0.19 5.01 8.06 -2.91 -0.02 4.99 14 23 H 0.13 5.31 5.88 -2.91 -0.02 5.29 14 Total: -1.00 -61.51 209.37 0.11 -61.40 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.43 Total: 12.65 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.44 Total: 8.52 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -6.29 Total: -106.38 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.16 Total: -18.43 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.68 Total: 42.25 kcal Total: -61.51 0.11 -61.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108265706.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.979 kcal (2) G-P(sol) polarization free energy of solvation -61.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds