Wall clock time and date at job start Mon Mar 30 2020 02:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39091 * 120.03059 * 312.48089 * 3 2 1 5 5 C 1.40471 * 119.58854 * 180.02562 * 4 3 2 6 6 C 1.41439 * 120.16977 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99338 * 204.46753 * 6 5 4 8 8 C 1.39935 * 120.00196 * 24.47183 * 6 5 4 9 9 N 1.30820 * 120.00181 * 17.88034 * 8 6 5 10 10 Si 1.86796 * 119.99534 * 197.88366 * 8 6 5 11 11 H 1.48500 * 109.47290 * 60.00253 * 10 8 6 12 12 H 1.48501 * 109.46742 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47595 * 299.99569 * 10 8 6 14 14 C 1.40792 * 119.65150 * 359.74324 * 5 4 3 15 15 C 1.37712 * 120.05170 * 0.51057 * 14 5 4 16 16 C 1.50702 * 119.79262 * 179.76884 * 15 14 5 17 17 F 1.39900 * 109.47238 * 89.71886 * 16 15 14 18 18 C 1.38364 * 120.42186 * 359.48800 * 15 14 5 19 19 H 1.07994 * 120.20519 * 359.97438 * 4 3 2 20 20 H 0.96998 * 119.99900 * 179.97438 * 9 8 6 21 21 H 1.08003 * 119.97501 * 180.27334 * 14 5 4 22 22 H 1.08999 * 109.47203 * 209.72238 * 16 15 14 23 23 H 1.09003 * 109.46996 * 329.72402 * 16 15 14 24 24 H 1.07990 * 119.82808 * 180.23492 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2645 -0.8123 0.8881 5 6 4.6691 -0.8039 0.8805 6 6 5.3897 -1.6253 1.7786 7 1 6.3971 -1.3598 2.0634 8 6 4.7975 -2.7818 2.2980 9 7 3.7471 -3.2979 1.7135 10 14 5.5068 -3.5887 3.8261 11 1 5.4682 -2.6270 4.9570 12 1 4.7033 -4.7892 4.1703 13 1 6.9124 -3.9912 3.5663 14 6 5.3558 0.0226 -0.0292 15 6 4.6516 0.8256 -0.8985 16 6 5.3926 1.7120 -1.8662 17 9 5.6229 1.0133 -3.0562 18 6 3.2680 0.8195 -0.8933 19 1 2.7286 -1.4453 1.5798 20 1 3.3368 -4.0998 2.0734 21 1 6.4358 0.0299 -0.0426 22 1 4.7960 2.5998 -2.0757 23 1 6.3459 2.0096 -1.4294 24 1 2.7254 1.4502 -1.5818 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116312871.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:20 Heat of formation + Delta-G solvation = -31.568177 kcal Electronic energy + Delta-G solvation = -12110.074947 eV Core-core repulsion = 9708.460069 eV Total energy + Delta-G solvation = -2401.614878 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.40133 -39.80349 -37.42350 -35.73274 -32.72658 -32.08956 -27.43684 -26.87017 -24.26028 -22.35777 -19.54408 -18.25018 -17.13178 -16.72368 -16.54882 -16.41922 -15.86002 -15.40934 -14.81029 -14.72356 -14.06070 -13.73125 -13.45259 -13.04294 -12.94203 -12.66096 -12.48841 -12.17030 -11.84643 -11.60099 -11.41031 -11.05812 -9.53242 -9.46420 -8.69104 -6.39392 0.25812 0.84961 1.42657 1.48917 1.54541 1.69396 2.10662 2.21851 2.76364 3.13208 3.58024 3.96272 4.22128 4.25323 4.52653 4.78090 4.92598 4.98847 5.15374 5.29504 5.38502 5.74814 5.85677 5.96256 6.13951 6.43394 6.60570 6.85506 6.86064 8.28078 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.011200 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.410571 B = 2499.311319 C = 3360.074861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.290 3.710 3 C -0.033 4.033 4 C -0.126 4.126 5 C 0.076 3.924 6 C -0.487 4.487 7 H 0.090 0.910 8 C 0.036 3.964 9 N -0.826 5.826 10 Si 0.980 3.020 11 H -0.259 1.259 12 H -0.275 1.275 13 H -0.256 1.256 14 C -0.180 4.180 15 C -0.112 4.112 16 C 0.112 3.888 17 F -0.232 7.232 18 C -0.169 4.169 19 H 0.109 0.891 20 H 0.290 0.710 21 H 0.118 0.882 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 5.000 -0.682 7.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.023 4.023 3 C -0.036 4.036 4 C -0.148 4.148 5 C 0.074 3.926 6 C -0.516 4.516 7 H 0.108 0.892 8 C -0.179 4.179 9 N -0.451 5.451 10 Si 0.801 3.199 11 H -0.183 1.183 12 H -0.200 1.200 13 H -0.180 1.180 14 C -0.200 4.200 15 C -0.112 4.112 16 C 0.058 3.942 17 F -0.213 7.213 18 C -0.191 4.191 19 H 0.127 0.873 20 H 0.100 0.900 21 H 0.136 0.864 22 H 0.123 0.877 23 H 0.120 0.880 24 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.206 4.783 -0.715 5.802 hybrid contribution 0.371 -0.818 0.614 1.088 sum 3.576 3.964 -0.101 5.340 Atomic orbital electron populations 1.81066 1.12820 1.11168 1.10861 1.26239 0.93117 0.91416 0.91526 1.16004 0.82856 1.02715 1.02075 1.21416 0.94931 0.99054 0.99408 1.17771 0.91439 0.91870 0.91536 1.19861 1.01923 1.06125 1.23643 0.89186 1.26755 0.94393 0.97008 0.99762 1.69827 1.19646 1.18690 1.36966 0.85259 0.79327 0.77644 0.77659 1.18292 1.19986 1.18021 1.21318 0.99100 1.01699 0.97890 1.19952 0.93465 0.99453 0.98356 1.20975 1.01734 0.92489 0.79028 1.92741 1.96226 1.82482 1.49900 1.20511 0.93414 1.03289 1.01894 0.87311 0.89975 0.86436 0.87687 0.88030 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -21.08 18.54 19.00 0.35 -20.73 14 2 C 0.29 12.44 15.32 88.33 1.35 13.79 14 3 C -0.03 -1.42 5.72 -21.42 -0.12 -1.54 14 4 C -0.13 -6.07 8.40 23.02 0.19 -5.88 14 5 C 0.08 3.66 5.57 -21.32 -0.12 3.54 14 6 C -0.49 -23.47 9.05 23.47 0.21 -23.26 14 7 H 0.09 4.07 7.91 -2.91 -0.02 4.04 14 8 C 0.04 1.70 5.14 85.25 0.44 2.13 14 9 N -0.83 -40.98 10.96 21.82 0.24 -40.74 14 10 Si 0.98 35.53 29.59 68.60 2.03 37.56 14 11 H -0.26 -9.16 7.11 99.48 0.71 -8.45 14 12 H -0.28 -9.75 7.11 99.48 0.71 -9.04 14 13 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 14 C -0.18 -7.48 9.42 22.77 0.21 -7.26 14 15 C -0.11 -4.09 5.58 -19.96 -0.11 -4.20 14 16 C 0.11 3.06 7.66 71.24 0.55 3.61 14 17 F -0.23 -7.59 17.34 44.97 0.78 -6.81 14 18 C -0.17 -6.44 9.40 22.71 0.21 -6.23 14 19 H 0.11 5.64 6.16 -2.91 -0.02 5.62 14 20 H 0.29 13.22 8.30 -92.71 -0.77 12.45 14 21 H 0.12 4.45 8.06 -2.91 -0.02 4.43 14 22 H 0.11 2.22 8.08 -2.39 -0.02 2.20 14 23 H 0.10 2.27 8.08 -2.39 -0.02 2.25 14 24 H 0.13 4.15 8.06 -2.92 -0.02 4.13 14 Total: -1.00 -54.03 233.65 7.44 -46.58 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.23 Total: 9.42 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 2.82 Total: -25.29 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.59 Total: -61.47 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 0.78 Total: -6.81 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Total: -54.03 7.44 -46.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116312871.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.015 kcal (2) G-P(sol) polarization free energy of solvation -54.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds