Wall clock time and date at job start Mon Mar 30 2020 02:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86802 * 119.99482 * 2 1 4 4 H 1.48500 * 109.46591 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47050 * 299.99666 * 3 2 1 6 6 H 1.48498 * 109.47584 * 60.00139 * 3 2 1 7 7 C 1.38840 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00014 * 190.69639 * 7 2 1 9 9 N 1.37213 * 120.00060 * 10.69893 * 7 2 1 10 10 C 1.37039 * 125.08905 * 21.24551 * 9 7 2 11 11 C 1.34298 * 109.92286 * 180.16302 * 10 9 7 12 12 C 1.46694 * 107.04946 * 359.57277 * 11 10 9 13 13 C 1.39524 * 133.91867 * 180.26164 * 12 11 10 14 14 C 1.37749 * 119.68774 * 179.97438 * 13 12 11 15 15 C 1.38946 * 120.34223 * 359.97438 * 14 13 12 16 16 F 1.35100 * 119.70571 * 180.02562 * 15 14 13 17 17 C 1.38110 * 120.59119 * 359.97438 * 15 14 13 18 18 C 1.38115 * 125.09128 * 200.92745 * 9 7 2 19 19 H 0.96998 * 120.00274 * 0.02562 * 1 2 3 20 20 H 1.08001 * 125.04273 * 0.03728 * 10 9 7 21 21 H 1.07997 * 126.47117 * 179.83354 * 11 10 9 22 22 H 1.07996 * 120.15946 * 359.97432 * 13 12 11 23 23 H 1.08000 * 119.82791 * 179.97438 * 14 13 12 24 24 H 1.08002 * 120.05114 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8896 2.3966 1.2125 7 6 2.0087 -1.2024 0.0005 8 1 3.0747 -1.2104 0.1741 9 7 1.3406 -2.3805 -0.2195 10 6 0.1251 -2.4923 -0.8424 11 6 -0.2470 -3.7817 -0.8916 12 6 0.8209 -4.5621 -0.2571 13 6 1.0119 -5.9227 -0.0144 14 6 2.1572 -6.3480 0.6219 15 6 3.1205 -5.4298 1.0213 16 9 4.2392 -5.8612 1.6438 17 6 2.9451 -4.0801 0.7865 18 6 1.7953 -3.6318 0.1480 19 1 -0.4850 0.8400 -0.0004 20 1 -0.4495 -1.6658 -1.2338 21 1 -1.1582 -4.1710 -1.3212 22 1 0.2653 -6.6391 -0.3238 23 1 2.3071 -7.4007 0.8113 24 1 3.6997 -3.3741 1.1003 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123871617.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:53 Heat of formation + Delta-G solvation = -6.751826 kcal Electronic energy + Delta-G solvation = -12485.044497 eV Core-core repulsion = 10084.505738 eV Total energy + Delta-G solvation = -2400.538760 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.70428 -41.82503 -37.62631 -34.97961 -32.76176 -30.63494 -29.08605 -26.81961 -23.59101 -22.39928 -21.73864 -19.64310 -17.98712 -17.48786 -16.81578 -16.57840 -16.43150 -15.62151 -15.16370 -14.87031 -14.29803 -14.17615 -13.63711 -13.34218 -12.98004 -12.76507 -12.42357 -12.17938 -12.06087 -11.70395 -11.04825 -10.42378 -9.03696 -8.75904 -8.42094 -6.31010 0.26819 0.73803 1.34364 1.36621 1.51045 2.06051 2.16540 2.84877 2.85279 3.11186 3.64880 4.00789 4.21769 4.40982 4.55503 4.67642 5.02570 5.09410 5.20500 5.31464 5.33254 5.40860 5.67000 5.72917 6.17874 6.32773 6.51486 7.04547 7.45759 8.38078 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.042908 B = 0.010677 C = 0.008680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.404492 B = 2621.777111 C = 3224.921475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.004 3.996 3 Si 1.012 2.988 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.269 1.269 7 C -0.377 4.377 8 H 0.103 0.897 9 N -0.309 5.309 10 C 0.055 3.945 11 C -0.265 4.265 12 C -0.150 4.150 13 C -0.042 4.042 14 C -0.195 4.195 15 C 0.080 3.920 16 F -0.150 7.150 17 C -0.168 4.168 18 C 0.039 3.961 19 H 0.286 0.714 20 H 0.163 0.837 21 H 0.158 0.842 22 H 0.158 0.842 23 H 0.158 0.842 24 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 -4.554 -0.712 4.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.201 4.201 3 Si 0.832 3.168 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.194 1.194 7 C -0.504 4.504 8 H 0.120 0.880 9 N 0.027 4.973 10 C -0.078 4.078 11 C -0.289 4.289 12 C -0.156 4.156 13 C -0.060 4.060 14 C -0.215 4.215 15 C 0.059 3.941 16 F -0.129 7.129 17 C -0.189 4.189 18 C -0.073 4.073 19 H 0.096 0.904 20 H 0.180 0.820 21 H 0.176 0.824 22 H 0.175 0.825 23 H 0.175 0.825 24 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.449 -4.064 -0.635 4.361 hybrid contribution 0.474 1.029 0.255 1.161 sum 1.923 -3.036 -0.380 3.613 Atomic orbital electron populations 1.69970 1.07572 1.30083 1.43532 1.26472 0.96593 1.03508 0.93567 0.84613 0.78354 0.75065 0.78744 1.18388 1.18816 1.19437 1.20204 0.94288 0.83156 1.52754 0.87952 1.40460 1.15172 1.03768 1.37926 1.22237 0.88615 0.98006 0.98898 1.21698 1.01637 0.91555 1.14025 1.19494 0.96008 0.93810 1.06331 1.20552 0.96756 0.92789 0.95893 1.20875 0.94782 0.99814 1.06046 1.17193 0.85052 0.91613 1.00237 1.91398 1.50476 1.90213 1.80819 1.19754 0.98151 0.94681 1.06336 1.18429 0.97597 0.86505 1.04785 0.90356 0.81960 0.82401 0.82486 0.82452 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.52 10.85 21.64 0.23 -45.29 14 2 C 0.00 0.20 5.35 84.89 0.45 0.66 14 3 Si 1.01 38.75 29.56 68.60 2.03 40.78 14 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 14 5 H -0.26 -9.62 7.11 99.48 0.71 -8.92 14 6 H -0.27 -10.02 7.11 99.48 0.71 -9.31 14 7 C -0.38 -20.27 9.93 84.00 0.83 -19.44 14 8 H 0.10 5.34 7.85 -2.91 -0.02 5.31 14 9 N -0.31 -16.69 2.92 -342.89 -1.00 -17.69 14 10 C 0.06 2.82 9.89 82.98 0.82 3.64 14 11 C -0.27 -11.88 11.09 23.58 0.26 -11.62 14 12 C -0.15 -6.76 6.37 -20.16 -0.13 -6.88 14 13 C -0.04 -1.49 10.10 22.46 0.23 -1.27 14 14 C -0.20 -6.72 10.00 22.32 0.22 -6.50 14 15 C 0.08 3.17 7.29 22.41 0.16 3.34 14 16 F -0.15 -5.62 17.26 44.97 0.78 -4.84 14 17 C -0.17 -7.68 9.92 22.41 0.22 -7.45 14 18 C 0.04 1.96 6.75 38.92 0.26 2.22 14 19 H 0.29 13.51 8.31 -92.71 -0.77 12.74 14 20 H 0.16 8.36 6.35 -2.91 -0.02 8.35 14 21 H 0.16 5.85 8.06 -2.91 -0.02 5.83 14 22 H 0.16 4.31 8.06 -2.91 -0.02 4.29 14 23 H 0.16 4.18 8.06 -2.91 -0.02 4.15 14 24 H 0.11 5.09 8.06 -2.91 -0.02 5.06 14 Total: -1.00 -58.44 223.33 6.59 -51.84 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.22 Total: 18.51 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 3.34 Total: -43.31 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.77 Total: -62.98 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.78 Total: -4.84 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -58.44 6.59 -51.84 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123871617.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.089 kcal (2) G-P(sol) polarization free energy of solvation -58.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds