Wall clock time and date at job start Mon Mar 30 2020 02:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30542 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99745 * 3 2 1 5 5 H 1.48494 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00041 * 3 2 1 7 7 C 1.40431 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00211 * 179.97438 * 7 2 1 9 9 C 1.39955 * 119.99746 * 0.02562 * 7 2 1 10 10 N 1.32388 * 125.12577 * 179.97438 * 9 7 2 11 11 C 1.34165 * 108.90554 * 180.02562 * 10 9 7 12 12 C 1.40335 * 133.47398 * 180.02562 * 11 10 9 13 13 C 1.37865 * 119.64322 * 179.97438 * 12 11 10 14 14 O 1.35932 * 119.80766 * 180.02562 * 13 12 11 15 15 C 1.39471 * 120.38413 * 0.02562 * 13 12 11 16 16 C 1.38010 * 120.55428 * 359.95444 * 15 13 12 17 17 C 1.38502 * 120.01385 * 0.04653 * 16 15 13 18 18 O 1.35070 * 125.12315 * 359.69510 * 9 7 2 19 19 H 0.97005 * 119.99823 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.18288 * 359.93418 * 12 11 10 21 21 H 0.96700 * 114.00756 * 89.99829 * 14 13 12 22 22 H 1.08006 * 119.72649 * 179.97438 * 15 13 12 23 23 H 1.07995 * 119.99515 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.0933 1.6963 -1.2125 5 1 1.2746 2.7464 0.0006 6 1 3.0932 1.6963 1.2125 7 6 2.0076 -1.2162 0.0005 8 1 3.0876 -1.2162 0.0001 9 6 1.3077 -2.4282 0.0005 10 7 1.8645 -3.6293 0.0005 11 6 0.8958 -4.5575 0.0000 12 6 0.9032 -5.9608 0.0002 13 6 -0.2914 -6.6490 -0.0001 14 8 -0.2881 -8.0083 0.0007 15 6 -1.5033 -5.9586 -0.0010 16 6 -1.5245 -4.5787 -0.0008 17 6 -0.3361 -3.8675 -0.0006 18 8 -0.0376 -2.5487 0.0059 19 1 -0.4850 0.8401 -0.0004 20 1 1.8396 -6.4989 -0.0002 21 1 -0.2876 -8.4013 0.8842 22 1 -2.4329 -6.5085 -0.0016 23 1 -2.4681 -4.0533 -0.0011 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214073824.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:15 Heat of formation + Delta-G solvation = -28.073447 kcal Electronic energy + Delta-G solvation = -12462.576326 eV Core-core repulsion = 10048.740201 eV Total energy + Delta-G solvation = -2413.836124 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.33269 -38.14341 -35.17266 -33.94377 -32.94655 -29.34793 -28.65354 -26.24141 -21.96563 -21.66332 -20.40565 -18.35965 -17.65573 -16.22190 -15.50832 -15.24034 -14.90925 -14.56167 -13.50501 -13.19361 -13.05488 -12.15661 -11.79878 -11.58492 -11.34221 -10.94796 -10.84856 -10.65541 -10.21695 -9.96426 -9.59107 -8.73121 -7.61076 -7.51514 -7.28416 -5.07664 1.88611 2.19602 2.81982 2.84936 2.89559 3.59288 3.66358 4.28459 4.46180 4.80541 5.06086 5.54248 5.81556 6.01321 6.20967 6.34240 6.61955 6.67790 6.96525 7.17746 7.25996 7.35435 7.64297 7.84566 8.10073 8.24094 8.31476 9.48147 9.71855 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.089335 B = 0.008349 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.351167 B = 3352.937107 C = 3653.887115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.065 3.935 3 Si 0.941 3.059 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.403 4.403 8 H 0.121 0.879 9 C 0.376 3.624 10 N -0.626 5.626 11 C 0.117 3.883 12 C -0.164 4.164 13 C 0.107 3.893 14 O -0.503 6.503 15 C -0.200 4.200 16 C -0.061 4.061 17 C -0.068 4.068 18 O -0.197 6.197 19 H 0.295 0.705 20 H 0.119 0.881 21 H 0.379 0.621 22 H 0.121 0.879 23 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 -1.849 1.622 3.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.161 4.161 3 Si 0.763 3.237 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.436 4.436 8 H 0.139 0.861 9 C 0.197 3.803 10 N -0.362 5.362 11 C -0.006 4.006 12 C -0.186 4.186 13 C 0.062 3.938 14 O -0.312 6.312 15 C -0.220 4.220 16 C -0.080 4.080 17 C -0.121 4.121 18 O -0.093 6.093 19 H 0.106 0.894 20 H 0.137 0.863 21 H 0.233 0.767 22 H 0.139 0.861 23 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.341 -1.647 1.006 2.350 hybrid contribution -0.541 0.720 0.494 1.027 sum -1.882 -0.927 1.500 2.579 Atomic orbital electron populations 1.69656 1.07956 1.31227 1.28730 1.26352 0.95230 1.02744 0.91785 0.85806 0.79676 0.77542 0.80713 1.18065 1.19673 1.18077 1.18791 0.95445 0.85567 1.43824 0.86145 1.22327 0.76282 0.93750 0.87983 1.71036 1.29694 0.97107 1.38379 1.19818 0.89701 0.94156 0.96926 1.20085 0.97374 0.90648 1.10489 1.17897 0.91862 0.81735 1.02311 1.84800 1.96684 1.16879 1.32804 1.20625 0.96931 0.92729 1.11734 1.19391 0.94331 0.92279 1.01996 1.20673 0.96822 0.83923 1.10660 1.85061 1.26177 1.21274 1.76821 0.89368 0.86264 0.76702 0.86078 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.54 11.93 55.57 0.66 -17.88 14 2 C 0.07 1.53 5.50 -17.27 -0.10 1.44 14 3 Si 0.94 16.90 29.56 -169.99 -5.03 11.88 14 4 H -0.26 -4.53 7.11 56.52 0.40 -4.13 14 5 H -0.27 -4.70 7.11 56.52 0.40 -4.30 14 6 H -0.26 -4.52 7.11 56.52 0.40 -4.12 14 7 C -0.40 -10.43 9.46 -38.11 -0.36 -10.79 14 8 H 0.12 2.90 7.85 -52.49 -0.41 2.49 14 9 C 0.38 10.65 7.60 -16.67 -0.13 10.52 14 10 N -0.63 -17.68 11.35 -11.09 -0.13 -17.81 14 11 C 0.12 3.06 7.22 -84.94 -0.61 2.45 14 12 C -0.16 -3.69 10.05 -38.93 -0.39 -4.09 14 13 C 0.11 2.12 6.69 -39.26 -0.26 1.86 14 14 O -0.50 -8.33 13.49 -19.52 -0.26 -8.59 14 15 C -0.20 -3.85 9.97 -39.21 -0.39 -4.24 14 16 C -0.06 -1.31 10.05 -39.57 -0.40 -1.71 14 17 C -0.07 -1.77 7.43 -38.36 -0.28 -2.05 14 18 O -0.20 -5.58 9.01 0.98 0.01 -5.57 14 19 H 0.29 6.41 8.29 -40.82 -0.34 6.07 14 20 H 0.12 2.51 8.06 -52.49 -0.42 2.09 14 21 H 0.38 4.23 9.06 45.56 0.41 4.64 14 22 H 0.12 1.95 8.06 -52.48 -0.42 1.52 14 23 H 0.12 2.24 8.06 -52.49 -0.42 1.82 14 LS Contribution 220.01 15.07 3.32 3.32 Total: -1.00 -30.43 220.01 -4.75 -35.18 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -0.40 Total: 6.10 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.92 Total: -6.61 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.54 Total: -35.69 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.25 Total: -14.16 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.43 -4.75 -35.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214073824.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.107 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds