Wall clock time and date at job start Mon Mar 30 2020 02:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30542 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99745 * 3 2 1 5 5 H 1.48494 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00041 * 3 2 1 7 7 C 1.40431 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00211 * 179.97438 * 7 2 1 9 9 C 1.39955 * 119.99746 * 0.02562 * 7 2 1 10 10 N 1.32388 * 125.12577 * 179.97438 * 9 7 2 11 11 C 1.34165 * 108.90554 * 180.02562 * 10 9 7 12 12 C 1.40335 * 133.47398 * 180.02562 * 11 10 9 13 13 C 1.37865 * 119.64322 * 179.97438 * 12 11 10 14 14 O 1.35932 * 119.80766 * 180.02562 * 13 12 11 15 15 C 1.39471 * 120.38413 * 0.02562 * 13 12 11 16 16 C 1.38010 * 120.55428 * 359.95444 * 15 13 12 17 17 C 1.38502 * 120.01385 * 0.04653 * 16 15 13 18 18 O 1.35070 * 125.12315 * 359.69510 * 9 7 2 19 19 H 0.97005 * 119.99823 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.18288 * 359.93418 * 12 11 10 21 21 H 0.96700 * 114.00756 * 89.99829 * 14 13 12 22 22 H 1.08006 * 119.72649 * 179.97438 * 15 13 12 23 23 H 1.07995 * 119.99515 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.0933 1.6963 -1.2125 5 1 1.2746 2.7464 0.0006 6 1 3.0932 1.6963 1.2125 7 6 2.0076 -1.2162 0.0005 8 1 3.0876 -1.2162 0.0001 9 6 1.3077 -2.4282 0.0005 10 7 1.8645 -3.6293 0.0005 11 6 0.8958 -4.5575 0.0000 12 6 0.9032 -5.9608 0.0002 13 6 -0.2914 -6.6490 -0.0001 14 8 -0.2881 -8.0083 0.0007 15 6 -1.5033 -5.9586 -0.0010 16 6 -1.5245 -4.5787 -0.0008 17 6 -0.3361 -3.8675 -0.0006 18 8 -0.0376 -2.5487 0.0059 19 1 -0.4850 0.8401 -0.0004 20 1 1.8396 -6.4989 -0.0002 21 1 -0.2876 -8.4013 0.8842 22 1 -2.4329 -6.5085 -0.0016 23 1 -2.4681 -4.0533 -0.0011 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214073824.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:15 Heat of formation + Delta-G solvation = -52.898961 kcal Electronic energy + Delta-G solvation = -12463.652841 eV Core-core repulsion = 10048.740201 eV Total energy + Delta-G solvation = -2414.912639 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.23399 -39.71757 -36.81307 -35.76167 -34.85141 -31.16249 -30.42204 -28.04897 -23.75564 -23.42375 -22.29646 -20.15450 -19.30576 -17.96791 -17.28413 -16.98665 -16.75491 -16.11918 -15.17107 -14.89282 -14.70740 -13.74117 -13.49701 -13.22281 -13.12989 -12.69872 -12.56310 -12.04815 -12.03969 -11.56266 -11.27593 -10.69889 -9.39584 -9.32426 -9.04570 -7.01873 0.13052 0.47011 1.33844 1.36576 1.55558 1.93333 2.10475 2.44650 2.73347 3.09802 3.28346 3.80484 4.15968 4.34047 4.55267 4.66060 4.83360 4.93201 5.23179 5.49008 5.55154 5.62166 5.88870 5.93184 6.27106 6.35457 6.94968 7.52709 7.98307 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.089335 B = 0.008349 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.351167 B = 3352.937107 C = 3653.887115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.025 3.975 3 Si 1.024 2.976 4 H -0.250 1.250 5 H -0.257 1.257 6 H -0.249 1.249 7 C -0.430 4.430 8 H 0.127 0.873 9 C 0.342 3.658 10 N -0.661 5.661 11 C 0.081 3.919 12 C -0.178 4.178 13 C 0.130 3.870 14 O -0.498 6.498 15 C -0.178 4.178 16 C -0.061 4.061 17 C -0.113 4.113 18 O -0.219 6.219 19 H 0.307 0.693 20 H 0.126 0.874 21 H 0.409 0.591 22 H 0.168 0.832 23 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -2.295 1.755 3.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.198 4.198 3 Si 0.840 3.160 4 H -0.173 1.173 5 H -0.180 1.180 6 H -0.173 1.173 7 C -0.463 4.463 8 H 0.144 0.856 9 C 0.163 3.837 10 N -0.399 5.399 11 C -0.040 4.040 12 C -0.200 4.200 13 C 0.084 3.916 14 O -0.311 6.311 15 C -0.198 4.198 16 C -0.080 4.080 17 C -0.164 4.164 18 O -0.117 6.117 19 H 0.119 0.881 20 H 0.144 0.856 21 H 0.268 0.732 22 H 0.185 0.815 23 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.293 -2.169 1.159 3.362 hybrid contribution -0.373 0.585 0.466 0.836 sum -2.666 -1.583 1.625 3.501 Atomic orbital electron populations 1.69702 1.09775 1.33104 1.28565 1.27502 0.96018 1.05997 0.90239 0.84630 0.78287 0.72068 0.81043 1.17333 1.18029 1.17251 1.19280 0.96045 0.86287 1.44677 0.85577 1.22879 0.76754 0.94656 0.89454 1.70935 1.30960 0.97819 1.40214 1.20236 0.89704 0.95444 0.98623 1.20358 0.99153 0.89418 1.11065 1.17901 0.91027 0.83132 0.99544 1.84733 1.96432 1.14561 1.35347 1.21131 0.98519 0.91799 1.08328 1.19860 0.93876 0.93307 1.00907 1.21293 0.98390 0.83346 1.13390 1.84973 1.26234 1.22843 1.77622 0.88109 0.85590 0.73175 0.81495 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.64 11.93 21.91 0.26 -39.38 14 2 C 0.03 1.19 5.50 85.42 0.47 1.66 14 3 Si 1.02 34.13 29.56 68.60 2.03 36.15 14 4 H -0.25 -7.99 7.11 99.48 0.71 -7.29 14 5 H -0.26 -7.83 7.11 99.48 0.71 -7.12 14 6 H -0.25 -7.93 7.11 99.48 0.71 -7.23 14 7 C -0.43 -23.19 9.46 23.22 0.22 -22.97 14 8 H 0.13 6.35 7.85 -2.91 -0.02 6.33 14 9 C 0.34 20.41 7.60 85.03 0.65 21.05 14 10 N -0.66 -39.33 11.35 -302.12 -3.43 -42.76 14 11 C 0.08 4.36 7.22 40.02 0.29 4.65 14 12 C -0.18 -7.95 10.05 22.69 0.23 -7.73 14 13 C 0.13 4.76 6.69 22.48 0.15 4.91 14 14 O -0.50 -14.29 13.49 -92.78 -1.25 -15.54 14 15 C -0.18 -6.21 9.97 22.51 0.22 -5.98 14 16 C -0.06 -2.53 10.05 22.28 0.22 -2.31 14 17 C -0.11 -5.99 7.43 23.06 0.17 -5.82 14 18 O -0.22 -13.03 9.01 -19.41 -0.17 -13.20 14 19 H 0.31 13.42 8.29 -92.70 -0.77 12.65 14 20 H 0.13 5.29 8.06 -2.91 -0.02 5.26 14 21 H 0.41 7.09 9.06 -74.06 -0.67 6.42 14 22 H 0.17 4.35 8.06 -2.91 -0.02 4.33 14 23 H 0.14 5.11 8.06 -2.91 -0.02 5.08 14 Total: -1.00 -69.47 220.01 0.65 -68.82 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.59 Total: 18.44 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 2.62 Total: -12.52 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -3.17 Total: -82.14 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.43 Total: -28.74 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.15 kcal Total: -69.47 0.65 -68.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214073824.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.922 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds