Wall clock time and date at job start Mon Mar 30 2020 02:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30945 * 1 3 3 Si 1.86793 * 120.00102 * 2 1 4 4 H 1.48509 * 109.47109 * 270.00104 * 3 2 1 5 5 H 1.48504 * 109.47157 * 29.99835 * 3 2 1 6 6 H 1.48495 * 109.47298 * 150.00235 * 3 2 1 7 7 C 1.39847 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00275 * 162.65343 * 7 2 1 9 9 C 1.41117 * 119.99895 * 342.64462 * 7 2 1 10 10 C 1.41051 * 120.11822 * 334.42156 * 9 7 2 11 11 C 1.36099 * 120.43896 * 180.24697 * 10 9 7 12 12 C 1.39473 * 120.49505 * 359.55112 * 11 10 9 13 13 O 1.35065 * 133.56052 * 180.13445 * 12 11 10 14 14 C 1.34265 * 108.22204 * 180.28482 * 13 12 11 15 15 N 1.29843 * 110.29908 * 359.97438 * 14 13 12 16 16 C 1.36147 * 108.75043 * 0.02562 * 15 14 13 17 17 C 1.39730 * 133.64888 * 179.97438 * 16 15 14 18 18 O 1.35586 * 120.38593 * 359.97438 * 17 16 15 19 19 H 0.97000 * 119.99395 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.78075 * 0.04346 * 10 9 7 21 21 H 1.08004 * 119.75486 * 179.70052 * 11 10 9 22 22 H 1.08004 * 124.84901 * 179.97438 * 14 13 12 23 23 H 0.96701 * 114.00098 * 90.00119 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 2.4909 2.0464 -1.4002 5 1 1.4409 2.6526 0.7000 6 1 3.5410 1.4401 0.7000 7 6 2.0086 -1.2111 -0.0005 8 1 3.0518 -1.2324 -0.2794 9 6 1.3512 -2.4055 0.3635 10 6 0.2262 -2.3635 1.2133 11 6 -0.4098 -3.5119 1.5725 12 6 0.0355 -4.7457 1.0985 13 8 -0.3835 -6.0173 1.2761 14 6 0.4283 -6.8281 0.5787 15 7 1.3404 -6.1351 -0.0324 16 6 1.1522 -4.8169 0.2515 17 6 1.8166 -3.6456 -0.1212 18 8 2.8972 -3.7005 -0.9384 19 1 -0.4849 0.8401 0.0004 20 1 -0.1309 -1.4140 1.5839 21 1 -1.2673 -3.4673 2.2277 22 1 0.3357 -7.9032 0.5328 23 1 2.6822 -3.6405 -1.8793 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214073912.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:19 Heat of formation + Delta-G solvation = -39.785076 kcal Electronic energy + Delta-G solvation = -12687.111234 eV Core-core repulsion = 10272.767255 eV Total energy + Delta-G solvation = -2414.343979 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.69674 -39.42998 -37.01235 -35.51517 -35.00241 -31.25442 -29.80599 -27.30157 -24.01849 -23.41614 -22.31593 -19.85508 -19.07011 -17.94952 -17.48124 -17.32133 -16.83011 -15.84650 -15.32561 -15.12795 -14.57017 -13.80086 -13.41100 -13.18227 -12.85887 -12.48449 -12.28248 -12.06326 -11.89161 -11.32309 -11.20438 -11.05705 -9.43814 -9.07642 -8.74944 -6.44245 0.17882 0.67029 1.40542 1.46465 1.56063 1.85406 2.05887 2.19675 2.52312 3.33103 3.43274 3.77160 4.28044 4.44073 4.69557 4.80529 5.02398 5.15678 5.42088 5.60969 5.67012 5.79227 5.93450 6.35679 6.61010 6.74139 6.89016 7.29811 8.18881 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.059283 B = 0.010423 C = 0.009087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.200948 B = 2685.744287 C = 3080.606901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.079 0.921 9 C 0.069 3.931 10 C -0.116 4.116 11 C -0.089 4.089 12 C -0.104 4.104 13 O -0.228 6.228 14 C 0.219 3.781 15 N -0.530 5.530 16 C 0.014 3.986 17 C -0.037 4.037 18 O -0.490 6.490 19 H 0.297 0.703 20 H 0.138 0.862 21 H 0.137 0.863 22 H 0.305 0.695 23 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -2.483 1.212 3.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.177 4.177 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.097 0.903 9 C 0.064 3.936 10 C -0.135 4.135 11 C -0.108 4.108 12 C -0.153 4.153 13 O -0.120 6.120 14 C -0.011 4.011 15 N -0.261 5.261 16 C -0.096 4.096 17 C -0.084 4.084 18 O -0.298 6.298 19 H 0.109 0.891 20 H 0.156 0.844 21 H 0.155 0.845 22 H 0.320 0.680 23 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.444 -2.595 1.366 3.269 hybrid contribution -0.425 0.728 -0.274 0.886 sum -1.869 -1.867 1.092 2.858 Atomic orbital electron populations 1.69833 1.08809 1.31601 1.33367 1.26808 0.95599 1.04518 0.90752 0.85097 0.79006 0.75349 0.79705 1.18596 1.18242 1.18675 1.19632 0.98295 0.91415 1.40250 0.90292 1.18078 0.92092 0.91940 0.91448 1.21035 0.97397 0.97032 0.98009 1.19570 1.01758 0.87114 1.02372 1.20093 1.00668 0.84877 1.09632 1.84314 1.51290 1.15286 1.61096 1.29238 0.84226 0.99920 0.87732 1.70492 1.26560 1.02561 1.26496 1.20101 0.96835 0.91525 1.01179 1.17678 0.96537 0.89476 1.04742 1.84659 1.30084 1.95625 1.19418 0.89143 0.84407 0.84513 0.67991 0.77922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.76 10.98 21.82 0.24 -38.52 14 2 C 0.04 1.91 5.13 85.21 0.44 2.34 14 3 Si 0.99 35.90 29.59 68.60 2.03 37.93 14 4 H -0.26 -9.20 7.11 99.48 0.71 -8.49 14 5 H -0.26 -8.68 7.11 99.48 0.71 -7.97 14 6 H -0.26 -9.67 7.11 99.48 0.71 -8.97 14 7 C -0.47 -24.62 8.69 23.37 0.20 -24.42 14 8 H 0.08 4.19 7.65 -2.91 -0.02 4.17 14 9 C 0.07 3.71 5.57 -21.19 -0.12 3.59 14 10 C -0.12 -5.80 8.60 22.46 0.19 -5.61 14 11 C -0.09 -4.09 9.98 22.07 0.22 -3.87 14 12 C -0.10 -4.91 7.44 23.08 0.17 -4.74 14 13 O -0.23 -9.01 10.77 -9.78 -0.11 -9.12 14 14 C 0.22 7.33 13.12 130.54 1.71 9.04 14 15 N -0.53 -23.52 11.34 -308.25 -3.50 -27.02 14 16 C 0.01 0.71 7.17 39.35 0.28 0.99 14 17 C -0.04 -1.97 6.78 23.32 0.16 -1.81 14 18 O -0.49 -25.00 12.80 -88.95 -1.14 -26.14 14 19 H 0.30 12.59 8.30 -92.71 -0.77 11.82 14 20 H 0.14 6.79 6.18 -2.91 -0.02 6.78 14 21 H 0.14 5.27 8.06 -2.91 -0.02 5.24 14 22 H 0.31 5.22 8.06 -2.91 -0.02 5.20 14 23 H 0.37 15.84 9.06 -74.06 -0.67 15.17 14 Total: -1.00 -65.78 216.61 1.38 -64.40 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.59 Total: 22.95 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 3.26 Total: -24.47 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -3.26 Total: -65.54 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.24 Total: -35.26 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -65.78 1.38 -64.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214073912.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.611 kcal (2) G-P(sol) polarization free energy of solvation -65.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds