Wall clock time and date at job start Mon Mar 30 2020 02:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30918 * 1 3 3 Si 1.86799 * 120.00203 * 2 1 4 4 H 1.48503 * 109.47232 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47020 * 119.99890 * 3 2 1 6 6 H 1.48494 * 109.47338 * 240.00031 * 3 2 1 7 7 C 1.39894 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00251 * 154.56919 * 7 2 1 9 9 C 1.40898 * 119.99857 * 334.56534 * 7 2 1 10 10 C 1.41170 * 120.08033 * 334.30946 * 9 7 2 11 11 C 1.35771 * 120.37243 * 179.73729 * 10 9 7 12 12 C 1.40521 * 120.31888 * 0.56401 * 11 10 9 13 13 N 1.35641 * 133.39879 * 179.69564 * 12 11 10 14 14 C 1.30138 * 108.91560 * 180.02562 * 13 12 11 15 15 O 1.34131 * 110.26923 * 359.97438 * 14 13 12 16 16 C 1.35257 * 108.05553 * 0.02562 * 15 14 13 17 17 C 1.38612 * 133.77723 * 179.97438 * 16 15 14 18 18 O 1.35680 * 120.29603 * 0.04514 * 17 16 15 19 19 H 0.96997 * 120.00252 * 174.17650 * 1 2 3 20 20 H 1.07994 * 119.81561 * 0.02652 * 10 9 7 21 21 H 1.07992 * 119.84134 * 180.23526 * 11 10 9 22 22 H 1.07999 * 124.86326 * 179.97438 * 14 13 12 23 23 H 0.96701 * 114.00109 * 269.97768 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 1.2783 2.7465 0.0006 5 1 3.0969 1.6963 1.2125 6 1 3.0970 1.6964 -1.2124 7 6 2.0086 -1.2115 -0.0005 8 1 3.0101 -1.2568 -0.4022 9 6 1.4065 -2.3728 0.5230 10 6 0.3940 -2.2655 1.5009 11 6 -0.1940 -3.3804 2.0055 12 6 0.2076 -4.6540 1.5682 13 7 -0.1816 -5.9140 1.8857 14 6 0.5160 -6.7601 1.1850 15 8 1.3775 -6.1071 0.3910 16 6 1.2173 -4.7804 0.6001 17 6 1.8187 -3.6473 0.0751 18 8 2.7943 -3.7615 -0.8609 19 1 -0.4850 -0.8357 -0.0852 20 1 0.0820 -1.2909 1.8461 21 1 -0.9704 -3.2881 2.7505 22 1 0.4157 -7.8343 1.2357 23 1 3.6868 -3.8219 -0.4935 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214074003.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:22 Heat of formation + Delta-G solvation = -23.646519 kcal Electronic energy + Delta-G solvation = -12735.654807 eV Core-core repulsion = 10322.010649 eV Total energy + Delta-G solvation = -2413.644158 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.98864 -37.79866 -35.62919 -34.16934 -32.77429 -29.02633 -28.59096 -25.27037 -22.48369 -21.65720 -20.60541 -18.47051 -17.47363 -16.54283 -15.93015 -15.46103 -14.59118 -14.28750 -13.81205 -13.35141 -13.01676 -12.39607 -11.85756 -11.30994 -11.15177 -10.89998 -10.57160 -10.19263 -10.09974 -9.82804 -9.48340 -9.18930 -7.80525 -7.71322 -7.33420 -4.72481 1.87613 2.47414 2.96815 3.01720 3.21277 3.43576 3.67119 3.81213 4.26898 4.94166 4.97782 5.39955 5.90642 6.13014 6.28624 6.41842 6.88059 6.91739 7.13077 7.25051 7.33534 7.49616 7.68516 7.75214 8.17827 8.38711 8.57482 8.92839 9.65470 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.058962 B = 0.010511 C = 0.009217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.767585 B = 2663.291805 C = 3037.192235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.033 3.967 3 Si 1.071 2.929 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.466 4.466 8 H 0.089 0.911 9 C 0.095 3.905 10 C -0.180 4.180 11 C -0.037 4.037 12 C -0.103 4.103 13 N -0.463 5.463 14 C 0.128 3.872 15 O -0.231 6.231 16 C 0.055 3.945 17 C -0.051 4.051 18 O -0.478 6.478 19 H 0.304 0.696 20 H 0.125 0.875 21 H 0.109 0.891 22 H 0.233 0.767 23 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.896 -1.564 1.495 3.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.192 4.192 3 Si 0.893 3.107 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.491 4.491 8 H 0.107 0.893 9 C 0.090 3.910 10 C -0.200 4.200 11 C -0.056 4.056 12 C -0.217 4.217 13 N -0.191 5.191 14 C -0.101 4.101 15 O -0.124 6.124 16 C 0.004 3.996 17 C -0.098 4.098 18 O -0.283 6.283 19 H 0.118 0.882 20 H 0.142 0.858 21 H 0.128 0.872 22 H 0.249 0.751 23 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.670 -0.042 1.572 2.294 hybrid contribution 1.005 -1.915 -0.161 2.169 sum 2.675 -1.957 1.411 3.602 Atomic orbital electron populations 1.70505 1.08231 1.34834 1.25521 1.27362 0.95620 1.04871 0.91300 0.83535 0.75692 0.73040 0.78449 1.19415 1.19568 1.19617 1.20590 1.03204 0.93154 1.32199 0.89274 1.17674 0.91701 0.91158 0.90426 1.20875 1.01221 0.97606 1.00324 1.19645 0.98435 0.88904 0.98623 1.19181 1.04599 0.91897 1.05982 1.70064 1.25035 1.00152 1.23890 1.27349 0.91220 0.99265 0.92311 1.84424 1.54047 1.17315 1.56616 1.20798 0.99691 0.81396 0.97682 1.17004 1.02267 0.87236 1.03297 1.84887 1.16020 1.95307 1.32096 0.88211 0.85765 0.87247 0.75070 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.83 12.31 55.55 0.68 -18.15 14 2 C 0.03 0.77 4.92 -17.32 -0.09 0.68 14 3 Si 1.07 19.50 30.00 -169.99 -5.10 14.40 14 4 H -0.27 -4.89 7.11 56.52 0.40 -4.49 14 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 14 6 H -0.27 -4.72 7.11 56.52 0.40 -4.32 14 7 C -0.47 -11.53 8.62 -37.96 -0.33 -11.85 14 8 H 0.09 2.14 7.70 -52.49 -0.40 1.74 14 9 C 0.09 2.42 5.31 -106.64 -0.57 1.85 14 10 C -0.18 -4.36 7.85 -39.35 -0.31 -4.66 14 11 C -0.04 -0.86 10.02 -39.61 -0.40 -1.26 14 12 C -0.10 -2.55 7.25 -84.49 -0.61 -3.16 14 13 N -0.46 -10.43 11.32 -12.34 -0.14 -10.57 14 14 C 0.13 2.48 13.13 52.04 0.68 3.16 14 15 O -0.23 -5.25 10.78 3.47 0.04 -5.22 14 16 C 0.05 1.38 7.35 -38.61 -0.28 1.09 14 17 C -0.05 -1.30 6.75 -38.30 -0.26 -1.56 14 18 O -0.48 -11.38 12.79 -18.74 -0.24 -11.62 14 19 H 0.30 7.71 6.69 -40.82 -0.27 7.43 14 20 H 0.12 2.93 6.47 -52.49 -0.34 2.60 14 21 H 0.11 2.28 8.06 -52.49 -0.42 1.86 14 22 H 0.23 2.99 8.06 -52.49 -0.42 2.57 14 23 H 0.35 6.64 9.06 45.56 0.41 7.05 14 LS Contribution 215.76 15.07 3.25 3.25 Total: -1.00 -29.57 215.76 -3.91 -33.48 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -0.25 Total: 10.13 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.16 Total: -15.70 kcal Atomic # 7 Polarization: -29.26 SS G_CDS: 0.54 Total: -28.72 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.20 Total: -16.84 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.10 Total: 14.40 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.57 -3.91 -33.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214074003.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.833 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds