Wall clock time and date at job start Mon Mar 30 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47372 * 270.00249 * 3 2 1 5 5 H 1.48504 * 109.47051 * 29.99947 * 3 2 1 6 6 H 1.48500 * 109.47205 * 149.99745 * 3 2 1 7 7 C 1.40178 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.39940 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.39120 * 125.69831 * 179.97438 * 9 7 2 11 11 C 1.40933 * 107.51447 * 180.02562 * 10 9 7 12 12 C 1.40548 * 133.07688 * 179.97438 * 11 10 9 13 13 C 1.36407 * 119.84683 * 179.79422 * 12 11 10 14 14 C 1.38946 * 120.61557 * 0.49021 * 13 12 11 15 15 C 1.38133 * 120.66130 * 359.48754 * 14 13 12 16 16 F 1.35112 * 120.07147 * 180.27904 * 15 14 13 17 17 C 1.39129 * 119.85695 * 0.26396 * 15 14 13 18 18 N 1.38146 * 132.79874 * 179.97438 * 17 15 14 19 19 H 0.97005 * 125.61527 * 0.02562 * 18 17 15 20 20 H 0.96995 * 120.00278 * 0.02562 * 1 2 3 21 21 H 1.08006 * 126.24358 * 0.06214 * 10 9 7 22 22 H 1.07998 * 120.07755 * 0.02938 * 12 11 10 23 23 H 1.08005 * 119.69321 * 180.26087 * 13 12 11 24 24 H 1.08002 * 119.67230 * 179.77454 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0465 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4402 0.7001 7 6 2.0084 -1.2140 -0.0005 8 1 3.0884 -1.2140 -0.0001 9 6 1.3088 -2.4259 -0.0005 10 6 1.8814 -3.6938 -0.0016 11 6 0.8311 -4.6335 -0.0018 12 6 0.8002 -6.0387 -0.0031 13 6 -0.3976 -6.6914 0.0013 14 6 -1.5911 -5.9800 -0.0031 15 6 -1.5879 -4.5987 -0.0014 16 9 -2.7556 -3.9190 0.0000 17 6 -0.3797 -3.9089 -0.0008 18 7 -0.0672 -2.5632 0.0004 19 1 -0.7075 -1.8346 0.0013 20 1 -0.4850 0.8400 -0.0004 21 1 2.9381 -3.9172 -0.0015 22 1 1.7226 -6.6003 -0.0038 23 1 -0.4184 -7.7712 0.0046 24 1 -2.5308 -6.5124 -0.0032 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214074084.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:34 Heat of formation + Delta-G solvation = -31.761159 kcal Electronic energy + Delta-G solvation = -12495.504608 eV Core-core repulsion = 10093.881362 eV Total energy + Delta-G solvation = -2401.623246 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.71868 -41.45718 -37.61264 -35.30565 -32.21531 -30.69246 -29.55264 -27.21213 -23.11370 -22.64915 -21.20489 -19.77004 -18.36073 -17.61079 -16.81317 -16.55839 -16.44373 -15.47488 -15.24931 -14.62173 -14.10568 -14.00760 -13.46690 -13.08128 -13.03424 -12.83051 -12.23926 -12.19136 -11.97210 -11.85523 -11.29491 -10.28766 -9.13629 -9.00054 -8.40627 -6.52600 0.31356 0.94764 1.31774 1.37222 1.54296 2.01428 2.11745 2.83235 3.05695 3.28366 3.56790 4.23483 4.24977 4.63564 4.71721 4.92449 5.01159 5.21536 5.37355 5.45490 5.56739 5.73201 5.83477 6.00397 6.26313 6.49760 6.62960 6.86929 7.39554 8.06753 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.054774 B = 0.009912 C = 0.008418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.065166 B = 2824.294541 C = 3325.517327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.028 3.972 3 Si 1.016 2.984 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.469 4.469 8 H 0.110 0.890 9 C 0.261 3.739 10 C -0.400 4.400 11 C -0.044 4.044 12 C -0.144 4.144 13 C -0.104 4.104 14 C -0.195 4.195 15 C 0.067 3.933 16 F -0.164 7.164 17 C -0.033 4.033 18 N -0.594 5.594 19 H 0.420 0.580 20 H 0.303 0.697 21 H 0.128 0.872 22 H 0.135 0.865 23 H 0.160 0.840 24 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -2.848 0.006 2.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.185 4.185 3 Si 0.835 3.165 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.502 4.502 8 H 0.128 0.872 9 C 0.149 3.851 10 C -0.422 4.422 11 C -0.049 4.049 12 C -0.163 4.163 13 C -0.123 4.123 14 C -0.214 4.214 15 C 0.045 3.955 16 F -0.143 7.143 17 C -0.139 4.139 18 N -0.210 5.210 19 H 0.268 0.732 20 H 0.115 0.885 21 H 0.146 0.854 22 H 0.153 0.847 23 H 0.178 0.822 24 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.132 -2.579 0.011 2.583 hybrid contribution -0.434 1.261 -0.009 1.334 sum -0.566 -1.318 0.002 1.435 Atomic orbital electron populations 1.68769 1.09543 1.32237 1.37842 1.27215 0.95648 1.05980 0.89699 0.84660 0.78659 0.73446 0.79759 1.18347 1.19109 1.17392 1.19491 0.96183 0.88836 1.45678 0.87207 1.18621 0.81061 0.95034 0.90396 1.20732 0.97118 0.90384 1.34001 1.18388 0.91565 0.94137 1.00832 1.20589 0.99248 0.90983 1.05467 1.20594 0.90225 1.00606 1.00898 1.20785 1.00869 0.89394 1.10371 1.17200 0.77343 0.90918 1.10062 1.91347 1.47077 1.81010 1.94873 1.18886 0.94922 0.86130 1.13931 1.43161 1.07843 1.04781 1.65212 0.73228 0.88470 0.85414 0.84671 0.82231 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -41.92 10.61 21.87 0.23 -41.69 14 2 C 0.03 1.31 5.50 85.32 0.47 1.78 14 3 Si 1.02 35.27 29.56 68.60 2.03 37.30 14 4 H -0.26 -8.69 7.11 99.48 0.71 -7.98 14 5 H -0.27 -8.84 7.11 99.48 0.71 -8.13 14 6 H -0.25 -8.36 7.11 99.48 0.71 -7.65 14 7 C -0.47 -24.17 9.31 23.15 0.22 -23.95 14 8 H 0.11 5.25 7.85 -2.91 -0.02 5.23 14 9 C 0.26 14.35 6.67 38.75 0.26 14.61 14 10 C -0.40 -20.83 10.88 23.14 0.25 -20.58 14 11 C -0.04 -2.17 6.14 -21.35 -0.13 -2.30 14 12 C -0.14 -5.71 10.08 22.41 0.23 -5.49 14 13 C -0.10 -3.55 9.96 22.01 0.22 -3.33 14 14 C -0.19 -7.29 10.00 22.41 0.22 -7.07 14 15 C 0.07 3.08 7.32 22.46 0.16 3.25 14 16 F -0.16 -7.52 17.27 44.97 0.78 -6.74 14 17 C -0.03 -1.69 7.22 39.07 0.28 -1.41 14 18 N -0.59 -32.66 5.84 -180.02 -1.05 -33.71 14 19 H 0.42 23.08 6.18 -92.70 -0.57 22.51 14 20 H 0.30 13.28 8.29 -92.71 -0.77 12.51 14 21 H 0.13 6.12 8.06 -2.91 -0.02 6.10 14 22 H 0.14 4.53 8.06 -2.91 -0.02 4.51 14 23 H 0.16 3.91 8.06 -2.91 -0.02 3.88 14 24 H 0.15 4.51 8.06 -2.91 -0.02 4.49 14 Total: -1.00 -58.71 222.25 4.83 -53.89 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.66 Total: 35.45 kcal Atomic # 6 Polarization: -46.68 SS G_CDS: 2.18 Total: -44.50 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -0.82 Total: -75.39 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.78 Total: -6.74 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -58.71 4.83 -53.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214074084.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.126 kcal (2) G-P(sol) polarization free energy of solvation -58.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds