Wall clock time and date at job start Mon Mar 30 2020 02:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30779 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48500 * 109.46879 * 239.99966 * 3 2 1 5 5 H 1.48503 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99910 * 3 2 1 7 7 C 1.40153 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00108 * 179.97438 * 7 2 1 9 9 C 1.39895 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.39146 * 125.69941 * 359.68926 * 9 7 2 11 11 C 1.40898 * 107.51042 * 179.90044 * 10 9 7 12 12 C 1.40532 * 133.04202 * 180.11690 * 11 10 9 13 13 C 1.36370 * 119.83519 * 180.26266 * 12 11 10 14 14 C 1.39196 * 120.56510 * 359.97438 * 13 12 11 15 15 F 1.35100 * 119.68492 * 180.02562 * 14 13 12 16 16 C 1.38227 * 120.63770 * 0.04680 * 14 13 12 17 17 C 1.38854 * 119.87739 * 359.95003 * 16 14 13 18 18 N 1.38065 * 132.76956 * 180.02562 * 17 16 14 19 19 H 0.96996 * 125.60742 * 359.95361 * 18 17 16 20 20 H 0.96996 * 119.99807 * 0.02562 * 1 2 3 21 21 H 1.08004 * 126.24414 * 0.03515 * 10 9 7 22 22 H 1.07999 * 120.08085 * 0.24466 * 12 11 10 23 23 H 1.08004 * 119.71297 * 180.02562 * 13 12 11 24 24 H 1.07999 * 120.06317 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.0955 1.6964 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0955 1.6964 1.2125 7 6 2.0086 -1.2137 0.0005 8 1 3.0886 -1.2137 0.0001 9 6 1.3091 -2.4253 0.0005 10 6 -0.0755 -2.5634 0.0062 11 6 -0.3639 -3.9426 0.0016 12 6 -1.5656 -4.6712 0.0019 13 6 -1.5324 -6.0345 0.0020 14 6 -0.3170 -6.7129 0.0014 15 9 -0.3048 -8.0639 0.0011 16 6 0.8778 -6.0178 0.0017 17 6 0.8702 -4.6293 0.0014 18 7 1.8785 -3.6862 0.0011 19 1 2.8297 -3.8764 0.0016 20 1 -0.4850 0.8400 -0.0004 21 1 -0.7974 -1.7601 0.0107 22 1 -2.5130 -4.1527 0.0022 23 1 -2.4571 -6.5925 0.0018 24 1 1.8155 -6.5536 0.0016 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214074166.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:56 Heat of formation + Delta-G solvation = -9.278336 kcal Electronic energy + Delta-G solvation = -12303.024564 eV Core-core repulsion = 9902.376246 eV Total energy + Delta-G solvation = -2400.648318 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.89234 -39.71695 -35.62369 -33.62891 -30.59244 -28.82515 -27.80684 -25.06476 -21.75005 -20.53621 -19.54057 -17.69474 -16.73806 -15.82496 -15.09204 -14.65204 -14.53922 -14.07145 -13.01570 -12.98408 -12.73452 -12.09589 -12.00859 -11.69081 -11.44116 -10.86599 -10.50142 -10.36125 -10.02568 -9.87206 -9.53381 -8.49461 -7.25505 -6.82308 -6.58843 -4.48880 2.08399 2.57157 2.92002 2.95129 2.97444 3.72452 3.94985 4.40160 4.87568 5.24199 5.44205 5.66942 5.84135 6.33166 6.49154 6.57938 6.85712 6.91567 7.04967 7.25420 7.47633 7.60937 7.69566 7.85626 8.17465 8.53080 8.62893 8.84787 9.08143 10.01311 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.085575 B = 0.008010 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.118263 B = 3494.584463 C = 3811.859598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.071 3.929 3 Si 0.930 3.070 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.441 4.441 8 H 0.078 0.922 9 C 0.263 3.737 10 C -0.321 4.321 11 C -0.051 4.051 12 C -0.112 4.112 13 C -0.162 4.162 14 C 0.020 3.980 15 F -0.163 7.163 16 C -0.148 4.148 17 C 0.057 3.943 18 N -0.626 5.626 19 H 0.399 0.601 20 H 0.283 0.717 21 H 0.167 0.833 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 -1.520 0.004 1.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.149 4.149 3 Si 0.754 3.246 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.096 0.904 9 C 0.157 3.843 10 C -0.343 4.343 11 C -0.056 4.056 12 C -0.132 4.132 13 C -0.183 4.183 14 C 0.000 4.000 15 F -0.143 7.143 16 C -0.170 4.170 17 C -0.048 4.048 18 N -0.234 5.234 19 H 0.234 0.766 20 H 0.095 0.905 21 H 0.184 0.816 22 H 0.131 0.869 23 H 0.129 0.871 24 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.042 -1.395 0.004 1.741 hybrid contribution 0.899 0.264 -0.005 0.937 sum 1.941 -1.131 -0.001 2.246 Atomic orbital electron populations 1.69691 1.07497 1.29148 1.33609 1.25815 0.94997 1.01320 0.92745 0.86000 0.79623 0.79073 0.79884 1.18891 1.19945 1.18882 1.18688 0.94475 0.88779 1.45401 0.90368 1.18194 0.91819 0.82131 0.92163 1.21802 0.94651 0.92758 1.25137 1.18602 0.91084 0.95223 1.00682 1.19982 0.96671 0.92195 1.04304 1.20195 0.95408 0.94756 1.07912 1.16840 0.93884 0.75558 1.13671 1.91336 1.97519 1.30107 1.95300 1.19513 0.96358 0.91369 1.09780 1.17817 0.89231 0.89214 1.08569 1.42198 1.06214 1.05282 1.69695 0.76632 0.90509 0.81577 0.86889 0.87074 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.81 10.18 55.56 0.57 -18.24 14 2 C 0.07 1.67 5.50 -17.28 -0.10 1.57 14 3 Si 0.93 17.32 29.56 -169.99 -5.03 12.30 14 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 14 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 14 6 H -0.26 -4.87 7.11 56.52 0.40 -4.46 14 7 C -0.44 -10.80 9.45 -38.24 -0.36 -11.16 14 8 H 0.08 1.76 7.85 -52.49 -0.41 1.35 14 9 C 0.26 6.70 6.83 -83.96 -0.57 6.12 14 10 C -0.32 -8.45 9.80 -38.24 -0.37 -8.83 14 11 C -0.05 -1.25 6.14 -106.89 -0.66 -1.91 14 12 C -0.11 -2.46 10.07 -39.39 -0.40 -2.85 14 13 C -0.16 -3.32 9.94 -39.90 -0.40 -3.72 14 14 C 0.02 0.43 7.30 -39.23 -0.29 0.14 14 15 F -0.16 -3.29 17.26 2.25 0.04 -3.25 14 16 C -0.15 -3.15 10.04 -39.36 -0.40 -3.55 14 17 C 0.06 1.33 7.24 -83.69 -0.61 0.72 14 18 N -0.63 -14.20 6.22 -8.29 -0.05 -14.26 14 19 H 0.40 7.64 8.96 -40.82 -0.37 7.27 14 20 H 0.28 6.21 8.29 -40.82 -0.34 5.87 14 21 H 0.17 4.52 5.58 -52.48 -0.29 4.23 14 22 H 0.11 2.22 8.06 -52.49 -0.42 1.80 14 23 H 0.11 1.96 8.06 -52.48 -0.42 1.53 14 24 H 0.11 2.04 8.06 -52.49 -0.42 1.62 14 LS Contribution 221.70 15.07 3.34 3.34 Total: -1.00 -26.67 221.70 -6.75 -33.42 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -1.47 Total: 10.15 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -4.14 Total: -23.45 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.51 Total: -32.50 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -26.67 -6.75 -33.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214074166.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.138 kcal (2) G-P(sol) polarization free energy of solvation -26.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds