Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86801 * 119.99803 * 2 1 4 4 H 1.48504 * 109.47116 * 239.99684 * 3 2 1 5 5 H 1.48492 * 109.47497 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47093 * 119.99696 * 3 2 1 7 7 C 1.40188 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00429 * 179.97438 * 7 2 1 9 9 C 1.39917 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.39135 * 125.69397 * 180.02562 * 9 7 2 11 11 C 1.40924 * 107.51292 * 179.73697 * 10 9 7 12 12 C 1.40499 * 133.06265 * 180.02562 * 11 10 9 13 13 C 1.36594 * 119.78924 * 180.02562 * 12 11 10 14 14 F 1.35100 * 119.73393 * 179.97438 * 13 12 11 15 15 C 1.39140 * 120.54262 * 359.91215 * 13 12 11 16 16 C 1.37954 * 120.67010 * 0.06809 * 15 13 12 17 17 C 1.38923 * 119.92425 * 359.97383 * 16 15 13 18 18 N 1.38139 * 132.76538 * 179.97438 * 17 16 15 19 19 H 0.97003 * 125.60918 * 0.02578 * 18 17 16 20 20 H 0.97009 * 120.00406 * 0.02562 * 1 2 3 21 21 H 1.08003 * 126.24079 * 359.76774 * 10 9 7 22 22 H 1.08006 * 120.10785 * 359.96450 * 12 11 10 23 23 H 1.07994 * 119.66221 * 180.02562 * 15 13 12 24 24 H 1.08004 * 120.03322 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0951 1.6965 1.2126 7 6 2.0084 -1.2140 0.0005 8 1 3.0884 -1.2141 0.0001 9 6 1.3088 -2.4257 0.0005 10 6 1.8815 -3.6938 0.0016 11 6 0.8313 -4.6334 0.0073 12 6 0.8008 -6.0381 0.0112 13 6 -0.3991 -6.6908 0.0161 14 9 -0.4272 -8.0415 0.0193 15 6 -1.5929 -5.9760 0.0192 16 6 -1.5871 -4.5964 0.0160 17 6 -0.3801 -3.9085 0.0100 18 7 -0.0674 -2.5630 0.0053 19 1 -0.7077 -1.8343 0.0058 20 1 -0.4851 0.8401 -0.0004 21 1 2.9382 -3.9171 -0.0011 22 1 1.7231 -6.6000 0.0092 23 1 -2.5335 -6.5065 0.0235 24 1 -2.5198 -4.0519 0.0180 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214074248.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = -17.318652 kcal Electronic energy + Delta-G solvation = -12318.793185 eV Core-core repulsion = 9917.796213 eV Total energy + Delta-G solvation = -2400.996972 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.96312 -39.72019 -35.70696 -33.46076 -30.87722 -28.80086 -27.65242 -25.38709 -21.60473 -20.71165 -19.37288 -17.92305 -16.48371 -16.06393 -15.16081 -14.83370 -14.68258 -13.81290 -13.00394 -12.95779 -12.52802 -12.23273 -11.96172 -11.58034 -11.54054 -11.21434 -10.83330 -10.40953 -10.33689 -9.85174 -9.52979 -8.72325 -7.29563 -7.20899 -6.64637 -4.66774 2.06982 2.56285 2.82963 2.86832 2.90346 3.63454 3.76358 4.72118 4.82991 5.10866 5.31409 5.70286 5.90548 6.31790 6.43976 6.64651 6.74744 6.97909 7.04483 7.19454 7.28811 7.41612 7.60212 7.76427 7.97314 8.31843 8.42129 8.73713 9.32763 9.75048 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.086994 B = 0.008017 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.783854 B = 3491.838977 C = 3803.776151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.069 3.931 3 Si 0.939 3.061 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.437 4.437 8 H 0.102 0.898 9 C 0.296 3.704 10 C -0.378 4.378 11 C -0.017 4.017 12 C -0.176 4.176 13 C 0.073 3.927 14 F -0.163 7.163 15 C -0.210 4.210 16 C -0.089 4.089 17 C 0.030 3.970 18 N -0.587 5.587 19 H 0.425 0.575 20 H 0.295 0.705 21 H 0.117 0.883 22 H 0.113 0.887 23 H 0.114 0.886 24 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -0.083 0.012 0.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.147 4.147 3 Si 0.762 3.238 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.470 4.470 8 H 0.120 0.880 9 C 0.184 3.816 10 C -0.401 4.401 11 C -0.022 4.022 12 C -0.196 4.196 13 C 0.052 3.948 14 F -0.142 7.142 15 C -0.230 4.230 16 C -0.110 4.110 17 C -0.076 4.076 18 N -0.202 5.202 19 H 0.273 0.727 20 H 0.106 0.894 21 H 0.135 0.865 22 H 0.131 0.869 23 H 0.132 0.868 24 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.180 0.147 0.012 1.189 hybrid contribution -0.052 0.757 -0.002 0.759 sum -1.232 0.904 0.010 1.528 Atomic orbital electron populations 1.68722 1.08103 1.30925 1.38031 1.26190 0.94928 1.02681 0.90938 0.85829 0.79584 0.78012 0.80349 1.18466 1.20070 1.18459 1.19121 0.95618 0.88183 1.44048 0.88004 1.18108 0.80832 0.93690 0.88934 1.20483 0.96383 0.90083 1.33111 1.17870 0.93503 0.91354 0.99504 1.19965 0.95693 0.93367 1.10529 1.16924 0.94629 0.75562 1.07658 1.91358 1.97582 1.30409 1.94896 1.20175 0.95856 0.93383 1.13591 1.19607 0.94746 0.92753 1.03943 1.18491 0.94537 0.85380 1.09169 1.43154 1.07749 1.04607 1.64740 0.72678 0.89355 0.86450 0.86890 0.86776 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -18.92 10.61 55.56 0.59 -18.33 14 2 C 0.07 1.56 5.50 -17.28 -0.10 1.46 14 3 Si 0.94 16.88 29.56 -169.99 -5.03 11.85 14 4 H -0.26 -4.65 7.11 56.52 0.40 -4.24 14 5 H -0.28 -4.84 7.11 56.52 0.40 -4.44 14 6 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14 7 C -0.44 -10.66 9.31 -38.22 -0.36 -11.01 14 8 H 0.10 2.33 7.85 -52.49 -0.41 1.91 14 9 C 0.30 7.63 6.67 -83.98 -0.56 7.07 14 10 C -0.38 -9.53 10.88 -38.23 -0.42 -9.95 14 11 C -0.02 -0.42 6.14 -106.92 -0.66 -1.08 14 12 C -0.18 -3.95 10.04 -39.32 -0.39 -4.34 14 13 C 0.07 1.55 7.24 -39.84 -0.29 1.26 14 14 F -0.16 -3.31 17.25 2.25 0.04 -3.27 14 15 C -0.21 -4.26 10.00 -39.35 -0.39 -4.66 14 16 C -0.09 -1.88 10.07 -39.43 -0.40 -2.28 14 17 C 0.03 0.73 7.24 -83.66 -0.61 0.13 14 18 N -0.59 -14.61 5.84 -8.28 -0.05 -14.66 14 19 H 0.42 10.25 6.18 -40.82 -0.25 10.00 14 20 H 0.29 6.07 8.29 -40.82 -0.34 5.73 14 21 H 0.12 2.76 8.06 -52.48 -0.42 2.34 14 22 H 0.11 2.32 8.06 -52.48 -0.42 1.90 14 23 H 0.11 1.99 8.06 -52.49 -0.42 1.57 14 24 H 0.11 2.01 8.06 -52.48 -0.42 1.59 14 LS Contribution 222.23 15.07 3.35 3.35 Total: -1.00 -25.58 222.23 -6.75 -32.33 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -1.49 Total: 12.11 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -4.16 Total: -23.39 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.54 Total: -32.98 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.27 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -25.58 -6.75 -32.33 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214074248.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.014 kcal (2) G-P(sol) polarization free energy of solvation -25.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds