Wall clock time and date at job start Mon Mar 30 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86804 * 120.00051 * 2 1 4 4 H 1.48500 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46824 * 299.99491 * 3 2 1 6 6 H 1.48494 * 109.47462 * 59.99874 * 3 2 1 7 7 C 1.40155 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.39895 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.39153 * 125.70062 * 0.02562 * 9 7 2 11 11 C 1.40870 * 107.50491 * 179.97438 * 10 9 7 12 12 C 1.41179 * 107.31508 * 0.02562 * 11 10 9 13 13 C 1.38844 * 119.49778 * 179.97438 * 12 11 10 14 14 C 1.38033 * 120.09024 * 0.02562 * 13 12 11 15 15 C 1.38821 * 120.74073 * 359.97015 * 14 13 12 16 16 C 1.37741 * 120.41165 * 0.30852 * 15 14 13 17 17 F 1.35097 * 120.18170 * 179.72188 * 16 15 14 18 18 N 1.38108 * 107.79743 * 359.97438 * 12 11 10 19 19 H 0.97005 * 125.60831 * 179.97438 * 18 12 11 20 20 H 0.97000 * 119.99683 * 0.02562 * 1 2 3 21 21 H 1.08001 * 126.24500 * 0.02562 * 10 9 7 22 22 H 1.08000 * 119.95643 * 179.97438 * 13 12 11 23 23 H 1.08006 * 119.62963 * 180.02562 * 14 13 12 24 24 H 1.08002 * 119.79081 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7017 1.3463 -0.0006 5 1 1.8831 2.3964 -1.2126 6 1 1.8831 2.3965 1.2124 7 6 2.0084 -1.2138 0.0005 8 1 3.0885 -1.2138 0.0001 9 6 1.3089 -2.4253 0.0005 10 6 -0.0757 -2.5635 -0.0005 11 6 -0.3639 -3.9424 -0.0007 12 6 0.8694 -4.6295 0.0008 13 6 0.8786 -6.0179 0.0015 14 6 -0.3111 -6.7178 0.0002 15 6 -1.5277 -6.0492 -0.0012 16 6 -1.5667 -4.6723 -0.0077 17 9 -2.7532 -4.0265 -0.0147 18 7 1.8781 -3.6861 0.0013 19 1 2.8293 -3.8764 0.0027 20 1 -0.4850 0.8401 -0.0004 21 1 -0.7976 -1.7602 -0.0018 22 1 1.8178 -6.5510 0.0022 23 1 -0.2954 -7.7977 0.0011 24 1 -2.4494 -6.6122 -0.0018 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214074337.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:30 Heat of formation + Delta-G solvation = -25.592379 kcal Electronic energy + Delta-G solvation = -12458.697666 eV Core-core repulsion = 10057.341918 eV Total energy + Delta-G solvation = -2401.355748 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.47419 -41.44618 -37.42312 -35.42061 -32.12884 -30.73885 -29.39704 -27.07510 -23.23249 -22.47884 -21.37798 -19.50944 -18.36789 -17.56305 -16.49833 -16.31400 -16.20752 -15.92007 -15.15364 -14.69901 -14.21708 -13.79101 -13.55222 -13.08104 -13.03479 -12.56110 -12.10586 -12.07492 -11.82906 -11.70169 -11.24250 -10.17960 -9.12567 -8.58491 -8.31289 -6.40569 0.36543 0.88638 1.39884 1.40536 1.57702 2.14623 2.18705 2.74278 3.10942 3.31911 3.75438 4.22216 4.27947 4.58593 4.78749 4.94933 5.08434 5.16776 5.45973 5.65187 5.73265 5.77270 5.81988 6.03839 6.40923 6.65690 6.68815 6.98788 7.33136 8.28381 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.053896 B = 0.009844 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.398747 B = 2843.832097 C = 3353.384566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.023 3.977 3 Si 1.011 2.989 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.467 4.467 8 H 0.096 0.904 9 C 0.244 3.756 10 C -0.369 4.369 11 C -0.114 4.114 12 C 0.048 3.952 13 C -0.121 4.121 14 C -0.136 4.136 15 C -0.163 4.163 16 C 0.030 3.970 17 F -0.167 7.167 18 N -0.617 5.617 19 H 0.417 0.583 20 H 0.288 0.712 21 H 0.139 0.861 22 H 0.144 0.856 23 H 0.163 0.837 24 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -5.004 0.006 6.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.193 4.193 3 Si 0.830 3.170 4 H -0.172 1.172 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.499 4.499 8 H 0.114 0.886 9 C 0.137 3.863 10 C -0.392 4.392 11 C -0.120 4.120 12 C -0.057 4.057 13 C -0.143 4.143 14 C -0.155 4.155 15 C -0.183 4.183 16 C 0.011 3.989 17 F -0.146 7.146 18 N -0.227 5.227 19 H 0.255 0.745 20 H 0.100 0.900 21 H 0.156 0.844 22 H 0.162 0.838 23 H 0.181 0.819 24 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.553 -4.847 0.005 6.009 hybrid contribution 0.068 0.965 -0.001 0.967 sum 3.620 -3.882 0.004 5.308 Atomic orbital electron populations 1.69872 1.09434 1.30254 1.34191 1.26991 0.95697 1.05087 0.91529 0.84729 0.79048 0.74442 0.78814 1.17155 1.19121 1.19108 1.19184 0.95394 0.89093 1.46245 0.88624 1.18385 0.91500 0.83868 0.92557 1.21626 0.95620 0.93189 1.28801 1.18764 0.92526 0.95737 1.04930 1.18361 0.87175 0.91369 1.08807 1.20298 1.00067 0.88756 1.05153 1.20693 0.89588 1.00362 1.04839 1.20890 1.00642 0.90325 1.06430 1.17659 0.78626 0.91151 1.11484 1.91303 1.45407 1.83015 1.94850 1.42086 1.07092 1.04265 1.69308 0.74488 0.90035 0.84380 0.83800 0.81934 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.27 10.18 21.87 0.22 -43.05 14 2 C 0.02 1.14 5.50 85.32 0.47 1.61 14 3 Si 1.01 36.44 29.56 68.60 2.03 38.47 14 4 H -0.25 -8.36 7.11 99.48 0.71 -7.65 14 5 H -0.27 -9.33 7.11 99.48 0.71 -8.62 14 6 H -0.27 -9.32 7.11 99.48 0.71 -8.61 14 7 C -0.47 -23.90 9.45 23.14 0.22 -23.68 14 8 H 0.10 4.39 7.85 -2.91 -0.02 4.37 14 9 C 0.24 13.21 6.83 38.74 0.26 13.47 14 10 C -0.37 -21.75 9.80 23.13 0.23 -21.52 14 11 C -0.11 -6.09 6.13 -21.31 -0.13 -6.22 14 12 C 0.05 2.21 7.23 39.02 0.28 2.49 14 13 C -0.12 -4.38 10.06 22.37 0.22 -4.16 14 14 C -0.14 -4.47 10.02 22.36 0.22 -4.25 14 15 C -0.16 -6.21 10.00 22.29 0.22 -5.99 14 16 C 0.03 1.48 7.37 22.75 0.17 1.64 14 17 F -0.17 -8.36 17.28 44.97 0.78 -7.58 14 18 N -0.62 -28.17 6.22 -180.18 -1.12 -29.29 14 19 H 0.42 15.44 8.96 -92.70 -0.83 14.60 14 20 H 0.29 13.81 8.29 -92.71 -0.77 13.04 14 21 H 0.14 8.78 5.58 -2.91 -0.02 8.77 14 22 H 0.14 4.02 8.06 -2.91 -0.02 3.99 14 23 H 0.16 3.78 8.06 -2.91 -0.02 3.76 14 24 H 0.14 4.50 8.06 -2.91 -0.02 4.48 14 Total: -1.00 -64.43 221.80 4.49 -59.94 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.41 Total: 28.11 kcal Atomic # 6 Polarization: -48.77 SS G_CDS: 2.17 Total: -46.60 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -0.90 Total: -72.34 kcal Atomic # 9 Polarization: -8.36 SS G_CDS: 0.78 Total: -7.58 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -64.43 4.49 -59.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214074337.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.345 kcal (2) G-P(sol) polarization free energy of solvation -64.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds