Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86791 * 120.00503 * 2 1 4 4 H 1.48500 * 109.47607 * 240.00278 * 3 2 1 5 5 H 1.48501 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47121 * 119.99847 * 3 2 1 7 7 C 1.39847 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00167 * 197.88882 * 7 2 1 9 9 C 1.41212 * 120.00044 * 17.88352 * 7 2 1 10 10 C 1.41145 * 120.10331 * 24.92941 * 9 7 2 11 11 C 1.35950 * 120.59500 * 180.02562 * 10 9 7 12 12 C 1.39826 * 120.46380 * 359.91751 * 11 10 9 13 13 N 1.37347 * 133.07082 * 180.02562 * 12 11 10 14 14 H 0.96999 * 124.98862 * 359.96582 * 13 12 11 15 15 C 1.36882 * 110.01676 * 179.97438 * 13 12 11 16 16 C 1.34190 * 109.95586 * 0.02562 * 15 13 12 17 17 C 1.40875 * 119.83260 * 0.02651 * 12 11 10 18 18 C 1.39339 * 120.08374 * 0.02562 * 17 12 11 19 19 F 1.35099 * 120.38157 * 179.72614 * 18 17 12 20 20 H 0.97004 * 119.99803 * 359.97438 * 1 2 3 21 21 H 1.07996 * 119.70278 * 359.97338 * 10 9 7 22 22 H 1.07995 * 119.76535 * 179.97438 * 11 10 9 23 23 H 1.07999 * 125.01943 * 179.97438 * 15 13 12 24 24 H 1.07999 * 126.55089 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6176 0.0000 4 1 3.0971 1.6963 -1.2125 5 1 1.2785 2.7464 0.0006 6 1 3.0971 1.6962 1.2125 7 6 2.0084 -1.2111 -0.0005 8 1 3.0493 -1.2340 0.2867 9 6 1.3535 -2.4043 -0.3766 10 6 0.2263 -2.3561 -1.2247 11 6 -0.4122 -3.4986 -1.5926 12 6 0.0394 -4.7412 -1.1374 13 7 -0.3946 -6.0285 -1.3396 14 1 -1.1568 -6.2793 -1.8846 15 6 0.4063 -6.9053 -0.6589 16 6 1.3670 -6.2348 -0.0046 17 6 1.1635 -4.8112 -0.2911 18 6 1.8232 -3.6452 0.0918 19 9 2.8984 -3.7049 0.9076 20 1 -0.4850 0.8401 0.0004 21 1 -0.1328 -1.4030 -1.5839 22 1 -1.2737 -3.4461 -2.2418 23 1 0.2827 -7.9782 -0.6492 24 1 2.1422 -6.6622 0.6141 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214074418.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = -18.571459 kcal Electronic energy + Delta-G solvation = -12553.921203 eV Core-core repulsion = 10152.869906 eV Total energy + Delta-G solvation = -2401.051298 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.02199 -41.54811 -37.77385 -34.95571 -32.22197 -30.87318 -29.07999 -26.83724 -23.01982 -22.59535 -21.29928 -19.15101 -18.86137 -17.41805 -16.89299 -15.98680 -15.85632 -15.51903 -15.26634 -14.71311 -14.08755 -13.94688 -13.62711 -13.25076 -12.80400 -12.73105 -12.33686 -11.93192 -11.65938 -11.58122 -10.96295 -10.19682 -9.02099 -8.73067 -8.31269 -6.26692 0.54659 1.00438 1.38426 1.49575 1.54371 2.06540 2.22079 2.57884 2.67087 3.55929 4.07830 4.21915 4.46902 4.59148 4.70981 4.95651 5.03554 5.17939 5.37016 5.62270 5.68823 5.95830 6.03202 6.08988 6.31687 6.55207 6.83358 6.94633 7.08836 8.30693 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.056569 B = 0.010417 C = 0.009006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.852475 B = 2687.301624 C = 3108.277316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.040 3.960 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.045 3.955 10 C -0.118 4.118 11 C -0.120 4.120 12 C 0.013 3.987 13 N -0.580 5.580 14 H 0.427 0.573 15 C 0.075 3.925 16 C -0.264 4.264 17 C -0.125 4.125 18 C -0.071 4.071 19 F -0.175 7.175 20 H 0.293 0.707 21 H 0.126 0.874 22 H 0.133 0.867 23 H 0.218 0.782 24 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 -6.184 -3.750 7.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.175 4.175 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.190 1.190 7 C -0.528 4.528 8 H 0.082 0.918 9 C 0.042 3.958 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.092 4.092 13 N -0.185 5.185 14 H 0.266 0.734 15 C -0.054 4.054 16 C -0.290 4.290 17 C -0.130 4.130 18 C -0.092 4.092 19 F -0.154 7.154 20 H 0.103 0.897 21 H 0.143 0.857 22 H 0.150 0.850 23 H 0.234 0.766 24 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.266 -6.067 -3.787 7.862 hybrid contribution 0.446 0.738 0.259 0.900 sum -2.820 -5.329 -3.528 6.986 Atomic orbital electron populations 1.69852 1.08639 1.30961 1.35486 1.26672 0.95626 1.04167 0.91009 0.85219 0.78861 0.75479 0.79939 1.18335 1.18240 1.19049 1.19507 0.98109 0.92597 1.42592 0.91752 1.17814 0.94004 0.91269 0.92721 1.20786 0.96910 0.97631 0.98427 1.19817 1.01634 0.89217 1.03402 1.17842 0.98832 0.86667 1.05867 1.41410 1.29075 1.03020 1.45009 0.73388 1.22246 0.91456 0.96686 0.94989 1.21721 1.05791 0.90266 1.11215 1.19263 0.98086 0.93468 1.02224 1.17537 0.93231 0.94033 1.04415 1.91161 1.54817 1.97324 1.72099 0.89672 0.85658 0.84968 0.76555 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.94 10.97 21.81 0.24 -42.70 14 2 C 0.04 2.08 5.12 85.22 0.44 2.52 14 3 Si 0.98 39.35 29.59 68.60 2.03 41.38 14 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 14 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 14 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 14 7 C -0.50 -28.94 8.76 23.39 0.20 -28.74 14 8 H 0.06 3.78 7.74 -2.91 -0.02 3.76 14 9 C 0.05 2.63 5.57 -21.23 -0.12 2.51 14 10 C -0.12 -6.16 8.60 22.45 0.19 -5.96 14 11 C -0.12 -5.36 9.99 22.12 0.22 -5.14 14 12 C 0.01 0.58 7.28 39.31 0.29 0.87 14 13 N -0.58 -18.11 6.05 -187.15 -1.13 -19.24 14 14 H 0.43 9.40 8.96 -92.71 -0.83 8.57 14 15 C 0.07 2.17 11.81 82.98 0.98 3.15 14 16 C -0.26 -10.40 11.09 23.54 0.26 -10.14 14 17 C -0.13 -6.23 6.34 -20.18 -0.13 -6.35 14 18 C -0.07 -4.04 7.36 23.14 0.17 -3.87 14 19 F -0.17 -10.12 16.73 44.97 0.75 -9.37 14 20 H 0.29 13.59 8.30 -92.71 -0.77 12.82 14 21 H 0.13 6.58 6.15 -2.91 -0.02 6.57 14 22 H 0.13 4.79 8.06 -2.91 -0.02 4.77 14 23 H 0.22 3.60 8.06 -2.91 -0.02 3.58 14 24 H 0.14 5.08 8.06 -2.91 -0.02 5.05 14 Total: -1.00 -68.76 221.92 4.81 -63.95 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.41 Total: 17.13 kcal Atomic # 6 Polarization: -53.67 SS G_CDS: 2.51 Total: -51.16 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.89 Total: -61.94 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 0.75 Total: -9.37 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -68.76 4.81 -63.95 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214074418.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.383 kcal (2) G-P(sol) polarization free energy of solvation -68.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds