Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86794 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47497 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47238 * 299.99990 * 3 2 1 6 6 H 1.48504 * 109.46937 * 60.00100 * 3 2 1 7 7 C 1.39960 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99853 * 162.33722 * 7 2 1 9 9 C 1.41055 * 120.00436 * 342.32631 * 7 2 1 10 10 C 1.41335 * 120.29836 * 155.45384 * 9 7 2 11 11 C 1.35154 * 120.95397 * 180.27813 * 10 9 7 12 12 C 1.41934 * 120.78323 * 359.71722 * 11 10 9 13 13 C 1.40158 * 129.93827 * 180.02562 * 12 11 10 14 14 N 1.29080 * 118.97718 * 179.97438 * 13 12 11 15 15 S 1.69581 * 108.42798 * 0.02562 * 14 13 12 16 16 C 1.41287 * 118.09141 * 0.02562 * 12 11 10 17 17 C 1.37928 * 121.34121 * 0.02562 * 16 12 11 18 18 H 0.97002 * 120.00053 * 0.02562 * 1 2 3 19 19 H 1.08002 * 119.52037 * 359.97438 * 10 9 7 20 20 H 1.07992 * 119.60822 * 179.69785 * 11 10 9 21 21 H 1.07992 * 120.51257 * 359.97438 * 13 12 11 22 22 H 1.07997 * 120.28543 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3963 1.2126 7 6 2.0080 -1.2121 -0.0005 8 1 3.0498 -1.2341 -0.2844 9 6 1.3526 -2.4051 0.3698 10 6 1.8267 -3.6528 -0.0949 11 6 1.2057 -4.8035 0.2472 12 6 0.0626 -4.7898 1.0883 13 6 -0.7209 -5.8523 1.5591 14 7 -1.7278 -5.5955 2.3248 15 16 -1.8134 -3.9173 2.5530 16 6 -0.4050 -3.5409 1.5551 17 6 0.2246 -2.3639 1.2080 18 1 -0.4850 0.8401 -0.0004 19 1 2.6948 -3.6869 -0.7364 20 1 1.5836 -5.7445 -0.1242 21 1 -0.4858 -6.8702 1.2854 22 1 -0.1476 -1.4185 1.5742 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214080882.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = 15.608513 kcal Electronic energy + Delta-G solvation = -10464.281767 eV Core-core repulsion = 8495.092706 eV Total energy + Delta-G solvation = -1969.189061 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.16788 -37.46479 -35.28889 -31.49179 -31.41624 -27.72644 -24.43471 -23.40876 -21.65830 -19.52728 -18.48397 -17.16425 -16.44722 -16.09340 -15.37058 -14.91952 -14.45717 -14.33404 -13.70125 -13.25030 -12.86589 -12.60538 -12.44688 -12.26941 -11.78418 -11.28964 -11.16726 -11.09475 -10.50120 -9.51745 -8.88020 -8.64495 -6.51998 -0.00628 0.89474 0.94324 1.30735 1.31547 1.40699 1.57001 1.75635 2.13403 2.60022 3.50946 4.11362 4.19361 4.59862 4.82804 4.92716 5.05900 5.14688 5.30591 5.57985 5.70154 5.91103 6.04771 6.06664 6.41131 6.65108 6.75747 8.07560 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.054820 B = 0.010279 C = 0.008863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.635470 B = 2723.271117 C = 3158.346340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.031 3.969 3 Si 0.992 3.008 4 H -0.246 1.246 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.444 4.444 8 H 0.104 0.896 9 C 0.108 3.892 10 C -0.216 4.216 11 C -0.014 4.014 12 C -0.298 4.298 13 C 0.160 3.840 14 N -0.517 5.517 15 S 0.054 5.946 16 C -0.087 4.087 17 C -0.187 4.187 18 H 0.298 0.702 19 H 0.130 0.870 20 H 0.148 0.852 21 H 0.206 0.794 22 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 -1.029 -1.204 4.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.189 4.189 3 Si 0.811 3.189 4 H -0.169 1.169 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.122 0.878 9 C 0.100 3.900 10 C -0.236 4.236 11 C -0.037 4.037 12 C -0.310 4.310 13 C -0.042 4.042 14 N -0.330 5.330 15 S 0.201 5.799 16 C -0.207 4.207 17 C -0.215 4.215 18 H 0.109 0.891 19 H 0.148 0.852 20 H 0.166 0.834 21 H 0.223 0.777 22 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.028 -0.949 0.180 2.246 hybrid contribution 1.239 0.645 -0.967 1.699 sum 3.267 -0.304 -0.787 3.374 Atomic orbital electron populations 1.69885 1.09684 1.31878 1.30343 1.27092 0.95464 1.05539 0.90844 0.84993 0.79840 0.75039 0.79046 1.16897 1.18726 1.19210 1.20255 0.99130 0.91575 1.36211 0.87764 1.18092 0.90305 0.94000 0.87579 1.20982 1.04280 0.92214 1.06114 1.20552 0.91351 0.98765 0.92993 1.19169 1.06038 0.90971 1.14801 1.22882 0.89020 1.01357 0.90920 1.76193 1.24774 1.05996 1.26026 1.84276 1.33015 1.05337 1.57224 1.23316 0.98435 0.98351 1.00548 1.20251 1.01807 0.94147 1.05268 0.89108 0.85250 0.83437 0.77743 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.45 10.97 21.83 0.24 -38.21 14 2 C 0.03 1.37 5.14 85.26 0.44 1.81 14 3 Si 0.99 33.36 29.59 68.60 2.03 35.39 14 4 H -0.25 -7.84 7.11 99.48 0.71 -7.13 14 5 H -0.26 -8.49 7.11 99.48 0.71 -7.78 14 6 H -0.27 -8.93 7.11 99.48 0.71 -8.23 14 7 C -0.44 -20.85 9.04 23.38 0.21 -20.64 14 8 H 0.10 4.46 7.91 -2.91 -0.02 4.43 14 9 C 0.11 5.32 5.58 -21.25 -0.12 5.20 14 10 C -0.22 -9.18 9.65 22.32 0.22 -8.97 14 11 C -0.01 -0.56 10.02 22.47 0.23 -0.33 14 12 C -0.30 -13.08 5.95 -21.15 -0.13 -13.21 14 13 C 0.16 6.25 11.19 85.56 0.96 7.21 14 14 N -0.52 -22.52 11.96 -59.67 -0.71 -23.24 14 15 S 0.05 2.49 23.92 -56.49 -1.35 1.14 14 16 C -0.09 -4.34 6.69 22.95 0.15 -4.19 14 17 C -0.19 -9.77 8.71 22.77 0.20 -9.57 14 18 H 0.30 12.89 8.30 -92.71 -0.77 12.12 14 19 H 0.13 4.75 8.06 -2.91 -0.02 4.72 14 20 H 0.15 4.30 8.06 -2.91 -0.02 4.28 14 21 H 0.21 5.88 8.06 -2.91 -0.02 5.85 14 22 H 0.11 5.78 6.19 -2.91 -0.02 5.76 14 Total: -1.00 -57.17 216.29 3.60 -53.57 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.24 Total: 14.03 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 2.16 Total: -42.69 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.47 Total: -61.45 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.39 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.35 Total: 1.14 kcal Total: -57.17 3.60 -53.57 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214080882.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.183 kcal (2) G-P(sol) polarization free energy of solvation -57.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds