Wall clock time and date at job start Mon Mar 30 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86799 * 119.99978 * 2 1 4 4 H 1.48506 * 109.46723 * 269.99946 * 3 2 1 5 5 H 1.48492 * 109.47446 * 29.99843 * 3 2 1 6 6 H 1.48503 * 109.47224 * 149.99967 * 3 2 1 7 7 C 1.39950 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00099 * 197.79856 * 7 2 1 9 9 C 1.40866 * 120.00243 * 17.80121 * 7 2 1 10 10 C 1.40706 * 120.37451 * 24.51161 * 9 7 2 11 11 C 1.38011 * 119.69641 * 179.97438 * 10 9 7 12 12 C 1.37711 * 121.33517 * 0.02562 * 11 10 9 13 13 C 1.41392 * 120.80571 * 359.69933 * 12 11 10 14 14 C 1.45027 * 130.42008 * 179.66476 * 13 12 11 15 15 N 1.28791 * 117.83703 * 180.38991 * 14 13 12 16 16 S 1.69398 * 108.91377 * 0.25529 * 15 14 13 17 17 C 1.40482 * 118.04738 * 0.55320 * 13 12 11 18 18 H 0.96999 * 120.00037 * 0.02562 * 1 2 3 19 19 H 1.08005 * 120.15447 * 359.95299 * 10 9 7 20 20 H 1.07998 * 119.33427 * 180.02562 * 11 10 9 21 21 H 1.08000 * 119.59840 * 179.97438 * 12 11 10 22 22 H 1.07996 * 121.08055 * 0.66487 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0463 -1.4002 5 1 1.4401 2.6527 0.7000 6 1 3.5401 1.4402 0.7001 7 6 2.0083 -1.2120 0.0005 8 1 3.0495 -1.2343 0.2865 9 6 1.3545 -2.4029 -0.3719 10 6 0.2241 -2.3623 -1.2086 11 6 -0.4053 -3.5376 -1.5652 12 6 0.0498 -4.7579 -1.1178 13 6 1.1857 -4.8444 -0.2802 14 6 1.8333 -6.0003 0.3097 15 7 2.8658 -5.7974 1.0522 16 16 3.1711 -4.1328 1.1253 17 6 1.8260 -3.6500 0.0898 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1497 -1.4156 -1.5700 20 1 -1.2723 -3.4997 -2.2080 21 1 -0.4644 -5.6603 -1.4139 22 1 1.4643 -6.9990 0.1285 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214081053.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:29 Heat of formation + Delta-G solvation = 31.625385 kcal Electronic energy + Delta-G solvation = -10528.545532 eV Core-core repulsion = 8560.051015 eV Total energy + Delta-G solvation = -1968.494518 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.27382 -35.65246 -33.55433 -30.12679 -29.02219 -25.59390 -23.08154 -21.31868 -20.21553 -17.86349 -16.23866 -15.31201 -14.93756 -14.40653 -13.75369 -13.22998 -12.92550 -12.86009 -11.79166 -11.35280 -11.29399 -10.89689 -10.57170 -10.46648 -10.29416 -9.70269 -9.42593 -9.35639 -8.54358 -7.66238 -7.06931 -6.89698 -4.55892 1.67915 2.53037 2.60646 2.94742 2.98757 3.00141 3.02845 3.34245 3.78721 4.40858 5.32241 5.42350 5.80253 6.24949 6.31485 6.70565 6.73248 6.95761 7.11851 7.18603 7.49024 7.64835 7.78765 7.93537 8.32336 8.56878 8.61771 9.93711 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.041100 B = 0.012631 C = 0.009919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.094695 B = 2216.184873 C = 2822.106526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.450 4.450 8 H 0.084 0.916 9 C 0.146 3.854 10 C -0.155 4.155 11 C -0.093 4.093 12 C -0.189 4.189 13 C -0.112 4.112 14 C 0.114 3.886 15 N -0.467 5.467 16 S 0.131 5.869 17 C -0.202 4.202 18 H 0.286 0.714 19 H 0.129 0.871 20 H 0.098 0.902 21 H 0.099 0.901 22 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -1.504 -1.645 2.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.139 3.861 10 C -0.179 4.179 11 C -0.112 4.112 12 C -0.213 4.213 13 C -0.122 4.122 14 C -0.097 4.097 15 N -0.278 5.278 16 S 0.282 5.718 17 C -0.323 4.323 18 H 0.097 0.903 19 H 0.146 0.854 20 H 0.117 0.883 21 H 0.117 0.883 22 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.782 -1.399 -0.205 2.275 hybrid contribution -1.271 0.584 -1.040 1.743 sum 0.511 -0.815 -1.244 1.573 Atomic orbital electron populations 1.69810 1.07704 1.29914 1.33022 1.25953 0.94800 1.01642 0.91878 0.86203 0.80615 0.79842 0.79633 1.18929 1.20011 1.18255 1.19549 0.98358 0.91030 1.38932 0.89835 1.16685 0.91400 0.88914 0.89054 1.21388 0.98806 0.97260 1.00487 1.20553 0.98629 0.92766 0.99254 1.20068 0.98600 0.96816 1.05836 1.20041 0.99259 0.90565 1.02373 1.23789 0.92266 0.99560 0.94050 1.75684 1.18895 1.11671 1.21596 1.84197 1.34547 0.98983 1.54057 1.23313 1.03066 0.97626 1.08247 0.90309 0.85365 0.88341 0.88322 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.94 10.96 55.55 0.61 -18.33 14 2 C 0.08 1.84 5.14 -17.33 -0.09 1.75 14 3 Si 0.91 17.80 29.60 -169.99 -5.03 12.77 14 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 14 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 14 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 14 7 C -0.45 -11.50 8.95 -37.95 -0.34 -11.84 14 8 H 0.08 2.10 7.91 -52.48 -0.41 1.68 14 9 C 0.15 3.77 5.57 -106.89 -0.60 3.18 14 10 C -0.15 -3.79 8.71 -38.73 -0.34 -4.13 14 11 C -0.09 -2.02 9.94 -39.86 -0.40 -2.41 14 12 C -0.19 -3.98 10.11 -38.57 -0.39 -4.37 14 13 C -0.11 -2.53 6.11 -105.16 -0.64 -3.17 14 14 C 0.11 2.30 11.46 -16.14 -0.18 2.11 14 15 N -0.47 -10.06 11.91 30.97 0.37 -9.69 14 16 S 0.13 2.98 23.76 -107.50 -2.55 0.43 14 17 C -0.20 -5.01 6.50 -37.66 -0.24 -5.26 14 18 H 0.29 6.24 8.30 -40.82 -0.34 5.90 14 19 H 0.13 3.17 6.17 -52.48 -0.32 2.85 14 20 H 0.10 1.84 8.06 -52.49 -0.42 1.42 14 21 H 0.10 1.76 8.06 -52.49 -0.42 1.33 14 22 H 0.17 2.62 8.06 -52.49 -0.42 2.20 14 LS Contribution 216.58 15.07 3.26 3.26 Total: -1.00 -26.76 216.58 -7.71 -34.47 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -1.14 Total: 1.24 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -3.22 Total: -24.15 kcal Atomic # 7 Polarization: -29.00 SS G_CDS: 0.98 Total: -28.02 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.55 Total: 0.43 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -26.76 -7.71 -34.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214081053.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.093 kcal (2) G-P(sol) polarization free energy of solvation -26.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds