Wall clock time and date at job start Mon Mar 30 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86799 * 119.99978 * 2 1 4 4 H 1.48506 * 109.46723 * 269.99946 * 3 2 1 5 5 H 1.48492 * 109.47446 * 29.99843 * 3 2 1 6 6 H 1.48503 * 109.47224 * 149.99967 * 3 2 1 7 7 C 1.39950 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00099 * 197.79856 * 7 2 1 9 9 C 1.40866 * 120.00243 * 17.80121 * 7 2 1 10 10 C 1.40706 * 120.37451 * 24.51161 * 9 7 2 11 11 C 1.38011 * 119.69641 * 179.97438 * 10 9 7 12 12 C 1.37711 * 121.33517 * 0.02562 * 11 10 9 13 13 C 1.41392 * 120.80571 * 359.69933 * 12 11 10 14 14 C 1.45027 * 130.42008 * 179.66476 * 13 12 11 15 15 N 1.28791 * 117.83703 * 180.38991 * 14 13 12 16 16 S 1.69398 * 108.91377 * 0.25529 * 15 14 13 17 17 C 1.40482 * 118.04738 * 0.55320 * 13 12 11 18 18 H 0.96999 * 120.00037 * 0.02562 * 1 2 3 19 19 H 1.08005 * 120.15447 * 359.95299 * 10 9 7 20 20 H 1.07998 * 119.33427 * 180.02562 * 11 10 9 21 21 H 1.08000 * 119.59840 * 179.97438 * 12 11 10 22 22 H 1.07996 * 121.08055 * 0.66487 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0463 -1.4002 5 1 1.4401 2.6527 0.7000 6 1 3.5401 1.4402 0.7001 7 6 2.0083 -1.2120 0.0005 8 1 3.0495 -1.2343 0.2865 9 6 1.3545 -2.4029 -0.3719 10 6 0.2241 -2.3623 -1.2086 11 6 -0.4053 -3.5376 -1.5652 12 6 0.0498 -4.7579 -1.1178 13 6 1.1857 -4.8444 -0.2802 14 6 1.8333 -6.0003 0.3097 15 7 2.8658 -5.7974 1.0522 16 16 3.1711 -4.1328 1.1253 17 6 1.8260 -3.6500 0.0898 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1497 -1.4156 -1.5700 20 1 -1.2723 -3.4997 -2.2080 21 1 -0.4644 -5.6603 -1.4139 22 1 1.4643 -6.9990 0.1285 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214081053.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:29 Heat of formation + Delta-G solvation = 17.032964 kcal Electronic energy + Delta-G solvation = -10529.178307 eV Core-core repulsion = 8560.051015 eV Total energy + Delta-G solvation = -1969.127292 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.00544 -37.37924 -35.31607 -31.91190 -30.78038 -27.40631 -24.78161 -23.08732 -21.92422 -19.64940 -18.01738 -17.00361 -16.68970 -16.05216 -15.48212 -14.95107 -14.58003 -14.54039 -13.50287 -13.13456 -12.87331 -12.58715 -12.33314 -12.14394 -12.00717 -11.41550 -11.15282 -11.10674 -10.31594 -9.45248 -8.84996 -8.66643 -6.42491 -0.03268 0.77754 0.87448 1.27928 1.35337 1.38565 1.49989 1.67390 2.16963 2.64168 3.49700 3.79184 4.22404 4.63778 4.70686 4.91585 5.04782 5.15738 5.35280 5.45959 5.79259 5.83923 6.02076 6.13572 6.49497 6.74092 6.79377 8.20504 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.041100 B = 0.012631 C = 0.009919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.094695 B = 2216.184873 C = 2822.106526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.043 3.957 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.488 4.488 8 H 0.072 0.928 9 C 0.114 3.886 10 C -0.173 4.173 11 C -0.097 4.097 12 C -0.171 4.171 13 C -0.128 4.128 14 C 0.132 3.868 15 N -0.472 5.472 16 S 0.103 5.897 17 C -0.235 4.235 18 H 0.295 0.705 19 H 0.118 0.882 20 H 0.133 0.867 21 H 0.144 0.856 22 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -2.610 -2.280 3.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.175 4.175 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.516 4.516 8 H 0.090 0.910 9 C 0.108 3.892 10 C -0.197 4.197 11 C -0.117 4.117 12 C -0.195 4.195 13 C -0.139 4.139 14 C -0.079 4.079 15 N -0.282 5.282 16 S 0.254 5.746 17 C -0.355 4.355 18 H 0.106 0.894 19 H 0.135 0.865 20 H 0.150 0.850 21 H 0.162 0.838 22 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.974 -2.519 -0.839 2.828 hybrid contribution -1.115 0.749 -0.888 1.610 sum -0.140 -1.770 -1.727 2.477 Atomic orbital electron populations 1.69825 1.08796 1.31231 1.33542 1.26690 0.95537 1.04277 0.90963 0.85210 0.79010 0.75780 0.79891 1.18111 1.18715 1.18727 1.19679 0.98202 0.92444 1.41299 0.91025 1.17032 0.92444 0.89700 0.89982 1.21467 0.99138 0.98140 1.00996 1.20943 0.99302 0.92142 0.99281 1.20603 0.97308 0.98181 1.03395 1.20552 0.99821 0.90699 1.02815 1.24416 0.90756 1.00915 0.91792 1.75806 1.19876 1.09970 1.22594 1.84180 1.35019 1.00624 1.54796 1.23595 1.04242 0.98408 1.09300 0.89421 0.86465 0.84964 0.83816 0.76151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.96 10.96 21.83 0.24 -39.72 14 2 C 0.04 2.07 5.14 85.25 0.44 2.51 14 3 Si 0.98 36.97 29.60 68.60 2.03 39.00 14 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 14 5 H -0.26 -9.29 7.11 99.48 0.71 -8.59 14 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 14 7 C -0.49 -25.90 8.95 23.33 0.21 -25.69 14 8 H 0.07 3.81 7.91 -2.91 -0.02 3.79 14 9 C 0.11 6.07 5.57 -21.33 -0.12 5.95 14 10 C -0.17 -8.52 8.71 22.82 0.20 -8.32 14 11 C -0.10 -4.03 9.94 22.09 0.22 -3.81 14 12 C -0.17 -6.59 10.11 22.92 0.23 -6.36 14 13 C -0.13 -5.50 6.11 -20.22 -0.12 -5.63 14 14 C 0.13 4.86 11.46 86.88 1.00 5.86 14 15 N -0.47 -19.48 11.91 -55.93 -0.67 -20.15 14 16 S 0.10 4.75 23.76 -56.49 -1.34 3.41 14 17 C -0.24 -11.76 6.50 23.52 0.15 -11.61 14 18 H 0.29 12.97 8.30 -92.71 -0.77 12.20 14 19 H 0.12 5.92 6.17 -2.91 -0.02 5.90 14 20 H 0.13 4.50 8.06 -2.91 -0.02 4.47 14 21 H 0.14 4.25 8.06 -2.91 -0.02 4.22 14 22 H 0.22 5.61 8.06 -2.91 -0.02 5.59 14 Total: -1.00 -58.52 216.58 3.70 -54.82 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.24 Total: 9.74 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 2.20 Total: -47.11 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.43 Total: -59.86 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.34 Total: 3.41 kcal Total: -58.52 3.70 -54.82 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214081053.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.849 kcal (2) G-P(sol) polarization free energy of solvation -58.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds