Wall clock time and date at job start Mon Mar 30 2020 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29830 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48493 * 109.47270 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46986 * 119.99928 * 3 2 1 6 6 H 1.48497 * 109.47185 * 239.99891 * 3 2 1 7 7 C 1.41810 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99927 * 154.67731 * 7 2 1 9 9 C 1.38188 * 119.99839 * 334.67217 * 7 2 1 10 10 C 1.41882 * 120.90158 * 334.71011 * 9 7 2 11 11 C 1.35009 * 120.49371 * 179.97438 * 10 9 7 12 12 C 1.40213 * 122.49145 * 359.97438 * 11 10 9 13 13 C 1.35219 * 121.77474 * 0.02562 * 12 11 10 14 14 C 1.46758 * 119.25788 * 359.72181 * 13 12 11 15 15 N 1.31264 * 121.11195 * 180.26076 * 14 13 12 16 16 C 1.24999 * 119.99703 * 0.26589 * 15 14 13 17 17 S 7.01177 * 108.52186 * 194.70889 * 2 1 3 18 18 H 0.97000 * 120.00021 * 174.19488 * 1 2 3 19 19 H 1.08009 * 119.75196 * 359.97438 * 10 9 7 20 20 H 1.08006 * 118.75641 * 179.97438 * 11 10 9 21 21 H 1.07994 * 119.11535 * 180.02562 * 12 11 10 22 22 H 1.07995 * 120.37053 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2983 0.0000 0.0000 3 14 2.2323 1.6178 0.0000 4 1 1.2674 2.7464 -0.0006 5 1 3.0860 1.6964 1.2125 6 1 3.0861 1.6964 -1.2125 7 6 2.0074 -1.2281 -0.0005 8 1 3.0095 -1.2728 -0.4006 9 6 1.4160 -2.3675 0.5109 10 6 0.3894 -2.2806 1.4864 11 6 -0.1830 -3.3992 1.9802 12 6 0.1950 -4.6844 1.5663 13 6 1.1626 -4.8789 0.6419 14 6 1.8330 -3.7155 0.0496 15 7 2.7735 -3.8621 -0.8544 16 6 3.1082 -5.0070 -1.2279 17 16 3.5257 -6.4307 -1.6881 18 1 -0.4850 -0.8357 -0.0850 19 1 0.0635 -1.3122 1.8367 20 1 -0.9617 -3.3004 2.7221 21 1 -0.2999 -5.5420 1.9973 22 1 1.4361 -5.8791 0.3400 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214297741.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:55 Heat of formation + Delta-G solvation = 45.989642 kcal Electronic energy + Delta-G solvation = -10382.093106 eV Core-core repulsion = 8414.221470 eV Total energy + Delta-G solvation = -1967.871637 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.48964 -36.04641 -34.45334 -30.19732 -28.86979 -25.82145 -24.12100 -21.26796 -20.78618 -18.47374 -16.99416 -15.31684 -15.01221 -14.38256 -13.65762 -13.27240 -12.99633 -12.74830 -12.06815 -11.67658 -11.40423 -11.13882 -11.07823 -10.70642 -10.27476 -10.10114 -9.66415 -8.71620 -8.31702 -8.28906 -7.96373 -6.83110 -4.80106 1.25537 1.35630 2.46288 2.63508 2.84714 2.99582 3.07082 3.37869 3.54646 4.03064 5.02480 5.50139 5.75821 5.83533 5.99816 6.31606 6.65242 6.79143 6.85816 7.17670 7.25506 7.37001 7.54311 7.76052 8.00943 8.14595 8.77257 9.26187 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.034393 B = 0.010585 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.916332 B = 2644.523819 C = 3354.424867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.029 3.971 3 Si 1.073 2.927 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.416 4.416 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.188 4.188 11 C -0.072 4.072 12 C -0.231 4.231 13 C -0.067 4.067 14 C -0.100 4.100 15 N -0.350 5.350 16 C 0.119 3.881 17 S -0.202 6.202 18 H 0.310 0.690 19 H 0.115 0.885 20 H 0.098 0.902 21 H 0.099 0.901 22 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 0.590 1.771 1.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.201 4.201 3 Si 0.893 3.107 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.442 4.442 8 H 0.115 0.885 9 C 0.108 3.892 10 C -0.207 4.207 11 C -0.092 4.092 12 C -0.252 4.252 13 C -0.090 4.090 14 C -0.215 4.215 15 N -0.049 5.049 16 C -0.193 4.193 17 S -0.065 6.065 18 H 0.125 0.875 19 H 0.133 0.867 20 H 0.116 0.884 21 H 0.117 0.883 22 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.382 2.143 1.310 2.540 hybrid contribution -0.368 -1.040 0.435 1.186 sum 0.014 1.103 1.745 2.064 Atomic orbital electron populations 1.70116 1.08669 1.35669 1.20819 1.27951 0.95515 1.05445 0.91171 0.83516 0.75834 0.72273 0.79103 1.18945 1.19018 1.19106 1.20975 1.02970 0.93243 1.27020 0.88470 1.18390 0.90642 0.89901 0.90258 1.20937 1.01322 0.97953 1.00531 1.20412 0.97867 0.92788 0.98084 1.19897 1.03949 0.96097 1.05234 1.22380 0.95299 0.95588 0.95732 1.19120 1.04339 0.93180 1.04858 1.59702 1.15861 1.14320 1.15050 1.29613 0.98738 0.89821 1.01105 1.88456 1.63024 0.91164 1.63816 0.87474 0.86737 0.88418 0.88283 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -16.66 12.27 55.65 0.68 -15.98 14 2 C 0.03 0.64 4.97 -17.03 -0.08 0.55 14 3 Si 1.07 18.48 30.02 -169.99 -5.10 13.38 14 4 H -0.27 -4.47 7.11 56.52 0.40 -4.07 14 5 H -0.27 -4.40 7.11 56.52 0.40 -4.00 14 6 H -0.27 -4.45 7.11 56.52 0.40 -4.05 14 7 C -0.42 -10.10 8.71 -38.24 -0.33 -10.43 14 8 H 0.10 2.40 7.83 -52.49 -0.41 1.99 14 9 C 0.11 2.84 5.48 -104.31 -0.57 2.27 14 10 C -0.19 -4.27 7.86 -39.34 -0.31 -4.57 14 11 C -0.07 -1.49 9.85 -39.99 -0.39 -1.89 14 12 C -0.23 -4.85 9.90 -39.92 -0.40 -5.25 14 13 C -0.07 -1.54 9.42 -37.22 -0.35 -1.89 14 14 C -0.10 -2.52 6.88 -80.46 -0.55 -3.07 14 15 N -0.35 -8.81 9.54 18.80 0.18 -8.63 14 16 C 0.12 2.75 13.11 49.98 0.66 3.40 14 17 S -0.20 -4.06 30.39 -107.50 -3.27 -7.32 14 18 H 0.31 7.24 6.67 -40.82 -0.27 6.97 14 19 H 0.11 2.53 6.49 -52.48 -0.34 2.19 14 20 H 0.10 1.72 8.06 -52.48 -0.42 1.30 14 21 H 0.10 1.80 8.06 -52.49 -0.42 1.37 14 22 H 0.10 2.24 7.20 -52.49 -0.38 1.87 14 LS Contribution 224.02 15.07 3.38 3.38 Total: -1.00 -24.97 224.02 -7.51 -32.48 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -1.04 Total: 3.56 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -2.34 Total: -20.87 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.86 Total: -24.60 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.10 Total: 13.38 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -3.27 Total: -7.32 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -24.97 -7.51 -32.48 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214297741.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.474 kcal (2) G-P(sol) polarization free energy of solvation -24.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds