Wall clock time and date at job start Mon Mar 30 2020 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29830 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48493 * 109.47270 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46986 * 119.99928 * 3 2 1 6 6 H 1.48497 * 109.47185 * 239.99891 * 3 2 1 7 7 C 1.41810 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99927 * 154.67731 * 7 2 1 9 9 C 1.38188 * 119.99839 * 334.67217 * 7 2 1 10 10 C 1.41882 * 120.90158 * 334.71011 * 9 7 2 11 11 C 1.35009 * 120.49371 * 179.97438 * 10 9 7 12 12 C 1.40213 * 122.49145 * 359.97438 * 11 10 9 13 13 C 1.35219 * 121.77474 * 0.02562 * 12 11 10 14 14 C 1.46758 * 119.25788 * 359.72181 * 13 12 11 15 15 N 1.31264 * 121.11195 * 180.26076 * 14 13 12 16 16 C 1.24999 * 119.99703 * 0.26589 * 15 14 13 17 17 S 7.01177 * 108.52186 * 194.70889 * 2 1 3 18 18 H 0.97000 * 120.00021 * 174.19488 * 1 2 3 19 19 H 1.08009 * 119.75196 * 359.97438 * 10 9 7 20 20 H 1.08006 * 118.75641 * 179.97438 * 11 10 9 21 21 H 1.07994 * 119.11535 * 180.02562 * 12 11 10 22 22 H 1.07995 * 120.37053 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2983 0.0000 0.0000 3 14 2.2323 1.6178 0.0000 4 1 1.2674 2.7464 -0.0006 5 1 3.0860 1.6964 1.2125 6 1 3.0861 1.6964 -1.2125 7 6 2.0074 -1.2281 -0.0005 8 1 3.0095 -1.2728 -0.4006 9 6 1.4160 -2.3675 0.5109 10 6 0.3894 -2.2806 1.4864 11 6 -0.1830 -3.3992 1.9802 12 6 0.1950 -4.6844 1.5663 13 6 1.1626 -4.8789 0.6419 14 6 1.8330 -3.7155 0.0496 15 7 2.7735 -3.8621 -0.8544 16 6 3.1082 -5.0070 -1.2279 17 16 3.5257 -6.4307 -1.6881 18 1 -0.4850 -0.8357 -0.0850 19 1 0.0635 -1.3122 1.8367 20 1 -0.9617 -3.3004 2.7221 21 1 -0.2999 -5.5420 1.9973 22 1 1.4361 -5.8791 0.3400 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214297741.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:55 Heat of formation + Delta-G solvation = 33.979543 kcal Electronic energy + Delta-G solvation = -10382.613903 eV Core-core repulsion = 8414.221470 eV Total energy + Delta-G solvation = -1968.392434 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.23285 -37.79220 -36.14116 -31.92127 -30.59919 -27.57842 -25.88006 -22.97807 -22.54498 -20.19256 -18.71689 -17.00043 -16.76942 -15.82426 -15.47068 -14.94429 -14.75809 -14.41751 -13.77268 -13.31045 -13.06127 -12.77926 -12.65212 -12.04443 -11.94656 -11.74474 -11.26595 -10.43153 -10.04207 -10.02122 -9.69687 -8.55185 -6.57587 -0.50998 -0.38870 0.77837 0.94043 1.43190 1.56219 1.62691 1.75964 2.12651 2.37365 3.25923 3.76179 4.08545 4.17281 4.34849 4.63433 4.90059 5.05177 5.14166 5.38397 5.53473 5.65710 5.82191 6.04749 6.24823 6.39867 7.01473 7.51397 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.034393 B = 0.010585 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.916332 B = 2644.523819 C = 3354.424867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.006 3.994 3 Si 1.120 2.880 4 H -0.256 1.256 5 H -0.255 1.255 6 H -0.260 1.260 7 C -0.447 4.447 8 H 0.080 0.920 9 C 0.091 3.909 10 C -0.203 4.203 11 C -0.066 4.066 12 C -0.224 4.224 13 C -0.084 4.084 14 C -0.133 4.133 15 N -0.384 5.384 16 C 0.099 3.901 17 S -0.130 6.130 18 H 0.298 0.702 19 H 0.114 0.886 20 H 0.135 0.865 21 H 0.134 0.866 22 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 -0.100 2.227 2.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.219 4.219 3 Si 0.933 3.067 4 H -0.179 1.179 5 H -0.179 1.179 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.098 0.902 9 C 0.085 3.915 10 C -0.222 4.222 11 C -0.086 4.086 12 C -0.244 4.244 13 C -0.107 4.107 14 C -0.247 4.247 15 N -0.086 5.086 16 C -0.211 4.211 17 S 0.007 5.993 18 H 0.112 0.888 19 H 0.132 0.868 20 H 0.153 0.847 21 H 0.152 0.848 22 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.227 1.418 1.768 2.278 hybrid contribution -0.282 -1.128 0.235 1.187 sum -0.055 0.289 2.003 2.025 Atomic orbital electron populations 1.70211 1.08993 1.34771 1.22277 1.29185 0.95524 1.07536 0.89681 0.82983 0.75074 0.68895 0.79707 1.17934 1.17889 1.18441 1.21056 1.02741 0.94631 1.28868 0.90162 1.18793 0.91542 0.90284 0.90914 1.21002 1.01665 0.98839 1.00735 1.20815 0.97803 0.92060 0.97898 1.20330 1.02788 0.97381 1.03902 1.22541 0.96155 0.95342 0.96688 1.19553 1.05305 0.94158 1.05730 1.59832 1.16961 1.15698 1.16147 1.30111 0.98940 0.90850 1.01196 1.88153 1.60628 0.88962 1.61581 0.88789 0.86784 0.84718 0.84810 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -34.29 12.27 22.15 0.27 -34.02 14 2 C 0.01 0.27 4.97 85.87 0.43 0.70 14 3 Si 1.12 37.09 30.02 68.60 2.06 39.15 14 4 H -0.26 -8.02 7.11 99.48 0.71 -7.31 14 5 H -0.25 -7.95 7.11 99.48 0.71 -7.24 14 6 H -0.26 -8.27 7.11 99.48 0.71 -7.57 14 7 C -0.45 -22.50 8.71 23.14 0.20 -22.30 14 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 14 9 C 0.09 4.63 5.48 -19.66 -0.11 4.52 14 10 C -0.20 -9.24 7.86 22.43 0.18 -9.07 14 11 C -0.07 -2.64 9.85 22.01 0.22 -2.42 14 12 C -0.22 -8.90 9.90 22.05 0.22 -8.69 14 13 C -0.08 -3.80 9.42 23.80 0.22 -3.57 14 14 C -0.13 -6.84 6.88 44.18 0.30 -6.53 14 15 N -0.38 -19.73 9.54 -82.24 -0.78 -20.52 14 16 C 0.10 4.50 13.11 131.22 1.72 6.22 14 17 S -0.13 -4.92 30.39 -56.49 -1.72 -6.64 14 18 H 0.30 14.30 6.67 -92.71 -0.62 13.68 14 19 H 0.11 5.10 6.49 -2.91 -0.02 5.08 14 20 H 0.13 4.29 8.06 -2.91 -0.02 4.27 14 21 H 0.13 4.34 8.06 -2.91 -0.02 4.31 14 22 H 0.11 4.68 7.20 -2.91 -0.02 4.66 14 Total: -1.00 -53.75 224.02 4.60 -49.15 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.39 Total: 14.03 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 3.38 Total: -41.14 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.51 Total: -54.54 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.06 Total: 39.15 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -1.72 Total: -6.64 kcal Total: -53.75 4.60 -49.15 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214297741.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.127 kcal (2) G-P(sol) polarization free energy of solvation -53.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds