Wall clock time and date at job start Mon Mar 30 2020 01:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.46848 * 2 1 4 4 C 1.38663 * 119.87224 * 270.24565 * 3 2 1 5 5 C 1.38613 * 120.49858 * 180.26008 * 4 3 2 6 6 C 1.37640 * 120.25094 * 359.49243 * 5 4 3 7 7 C 1.50698 * 120.13005 * 180.23333 * 6 5 4 8 8 C 1.53003 * 109.46724 * 264.99713 * 7 6 5 9 9 C 1.40700 * 119.74050 * 0.25297 * 6 5 4 10 10 C 1.41398 * 120.24228 * 180.02562 * 9 6 5 11 11 H 1.08001 * 120.00142 * 334.16795 * 10 9 6 12 12 C 1.39945 * 120.00198 * 154.17392 * 10 9 6 13 13 N 1.30826 * 119.99644 * 343.52367 * 12 10 9 14 14 Si 1.86803 * 120.00211 * 163.52860 * 12 10 9 15 15 H 1.48504 * 109.47051 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47276 * 119.99718 * 14 12 10 17 17 H 1.48497 * 109.47046 * 239.99761 * 14 12 10 18 18 C 1.37597 * 119.88203 * 90.00177 * 3 2 1 19 19 H 1.08996 * 109.46908 * 300.00232 * 1 2 3 20 20 H 1.08995 * 109.46543 * 60.00362 * 1 2 3 21 21 H 1.08994 * 109.46938 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47650 * 239.99754 * 2 1 3 23 23 H 1.09001 * 109.47181 * 119.99461 * 2 1 3 24 24 H 1.07996 * 119.75213 * 0.02562 * 4 3 2 25 25 H 1.07996 * 119.87618 * 179.76862 * 5 4 3 26 26 H 1.08994 * 109.47002 * 24.99826 * 7 6 5 27 27 H 1.09000 * 109.47222 * 145.00201 * 7 6 5 28 28 H 1.08994 * 109.47474 * 299.99824 * 8 7 6 29 29 H 1.08995 * 109.47286 * 60.00412 * 8 7 6 30 30 H 1.09007 * 109.46735 * 180.02562 * 8 7 6 31 31 H 0.96997 * 119.99687 * 179.97438 * 13 12 10 32 32 H 1.08007 * 120.11919 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2576 2.0737 -1.2024 5 6 2.7246 3.3787 -1.2176 6 6 2.9601 4.0447 -0.0363 7 6 3.4628 5.4652 -0.0560 8 6 4.9881 5.4680 0.0635 9 6 2.7299 3.3939 1.1898 10 6 2.9677 4.0682 2.4096 11 1 3.6847 4.8749 2.4499 12 6 2.2740 3.6904 3.5648 13 7 1.1954 2.9563 3.4694 14 14 2.8881 4.2343 5.2431 15 1 4.1184 5.0499 5.0795 16 1 1.8412 5.0460 5.9141 17 1 3.1934 3.0391 6.0697 18 6 2.2608 2.0671 1.1930 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8935 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 2.0715 1.5603 -2.1341 25 1 2.9002 3.8763 -2.1598 26 1 3.1707 5.9410 -0.9921 27 1 3.0318 6.0148 0.7809 28 1 5.2802 4.9922 0.9996 29 1 5.4191 4.9185 -0.7733 30 1 5.3517 6.4956 0.0497 31 1 0.7148 2.6941 4.2701 32 1 2.0813 1.5578 2.1284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221321656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:49 Heat of formation + Delta-G solvation = -15.107911 kcal Electronic energy + Delta-G solvation = -13054.701502 eV Core-core repulsion = 10978.519706 eV Total energy + Delta-G solvation = -2076.181796 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.98158 -34.34081 -33.46258 -31.28988 -29.45305 -27.46795 -25.25402 -23.29845 -21.21850 -20.99679 -18.84831 -16.87318 -15.26367 -14.44161 -14.32646 -13.82782 -13.23723 -12.83986 -12.59237 -12.28865 -12.13150 -11.95206 -11.41358 -11.26955 -11.08062 -10.80322 -10.55269 -10.43220 -10.35270 -10.07496 -10.01558 -9.34098 -9.15640 -9.04380 -7.27870 -7.07898 -6.67476 -4.28526 2.81118 3.04595 3.10141 3.14942 3.27598 3.97238 4.66527 5.61442 5.79517 5.80034 5.99423 6.02743 6.18700 6.33101 6.38749 6.44809 6.52385 6.60141 6.62599 6.68598 6.82536 6.90672 7.02072 7.06688 7.20740 7.39965 7.51775 7.72158 8.00263 8.13542 8.20861 8.39007 8.70396 8.97711 9.06617 10.25755 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.014542 C = 0.009457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.448637 B = 1925.061070 C = 2960.027617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 C -0.078 4.078 4 C -0.234 4.234 5 C -0.093 4.093 6 C -0.193 4.193 7 C -0.058 4.058 8 C -0.141 4.141 9 C 0.115 3.885 10 C -0.460 4.460 11 H 0.080 0.920 12 C 0.076 3.924 13 N -0.796 5.796 14 Si 0.902 3.098 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.273 1.273 18 C -0.155 4.155 19 H 0.059 0.941 20 H 0.049 0.951 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.277 0.723 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 -0.768 -1.966 2.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.078 4.078 4 C -0.253 4.253 5 C -0.111 4.111 6 C -0.194 4.194 7 C -0.096 4.096 8 C -0.198 4.198 9 C 0.112 3.888 10 C -0.490 4.490 11 H 0.098 0.902 12 C -0.141 4.141 13 N -0.422 5.422 14 Si 0.727 3.273 15 H -0.184 1.184 16 H -0.201 1.201 17 H -0.199 1.199 18 C -0.175 4.175 19 H 0.078 0.922 20 H 0.068 0.932 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.134 -0.863 -1.814 2.307 hybrid contribution 0.108 0.189 0.769 0.799 sum 1.242 -0.674 -1.045 1.758 Atomic orbital electron populations 1.21695 0.95960 0.99869 1.02232 1.20377 0.95373 0.94886 1.00517 1.19453 1.00084 0.94377 0.93920 1.20194 1.13267 0.96358 0.95492 1.20365 1.00372 0.94601 0.95809 1.19693 1.11196 0.95439 0.93090 1.20104 0.94498 0.94883 1.00074 1.21730 0.96943 0.99420 1.01749 1.17437 0.88780 0.90970 0.91583 1.19602 1.20802 1.16136 0.92462 0.90185 1.25887 0.93463 0.93623 1.01138 1.69841 1.12365 1.28966 1.31012 0.86361 0.79967 0.79270 0.81723 1.18447 1.20121 1.19853 1.21174 1.05520 0.94875 0.95902 0.92216 0.93226 0.94000 0.92978 0.92487 0.89840 0.89716 0.94028 0.91718 0.92366 0.93825 0.94398 0.91168 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.90 37.16 0.37 -2.14 16 2 C -0.07 -1.45 6.06 -27.88 -0.17 -1.62 16 3 C -0.08 -1.84 5.13 -104.70 -0.54 -2.37 16 4 C -0.23 -5.37 9.70 -39.29 -0.38 -5.76 16 5 C -0.09 -2.16 9.66 -39.66 -0.38 -2.54 16 6 C -0.19 -4.69 5.19 -103.91 -0.54 -5.23 16 7 C -0.06 -1.23 5.41 -27.88 -0.15 -1.38 16 8 C -0.14 -2.64 9.79 37.16 0.36 -2.28 16 9 C 0.11 3.04 5.56 -106.83 -0.59 2.45 16 10 C -0.46 -12.06 8.11 -37.74 -0.31 -12.36 16 11 H 0.08 2.02 6.09 -52.49 -0.32 1.70 16 12 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 13 N -0.80 -20.64 10.97 55.55 0.61 -20.03 16 14 Si 0.90 18.80 29.59 -169.99 -5.03 13.77 16 15 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 18 C -0.16 -4.06 8.32 -38.88 -0.32 -4.38 16 19 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 23 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 24 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 25 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 26 H 0.04 0.79 8.05 -51.93 -0.42 0.38 16 27 H 0.06 1.41 7.06 -51.93 -0.37 1.05 16 28 H 0.06 1.16 7.30 -51.93 -0.38 0.78 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 32 H 0.12 3.15 6.21 -52.48 -0.33 2.82 16 LS Contribution 265.86 15.07 4.01 4.01 Total: -1.00 -26.93 265.86 -7.90 -34.83 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.74 Total: 3.21 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: -2.74 Total: -35.79 kcal Atomic # 7 Polarization: -20.64 SS G_CDS: 0.61 Total: -20.03 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.93 -7.90 -34.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221321656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.725 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds