Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.46848 * 2 1 4 4 C 1.38663 * 119.87224 * 270.24565 * 3 2 1 5 5 C 1.38613 * 120.49858 * 180.26008 * 4 3 2 6 6 C 1.37640 * 120.25094 * 359.49243 * 5 4 3 7 7 C 1.50698 * 120.13005 * 180.23333 * 6 5 4 8 8 C 1.53003 * 109.46724 * 264.99713 * 7 6 5 9 9 C 1.40700 * 119.74050 * 0.25297 * 6 5 4 10 10 C 1.41398 * 120.24228 * 180.02562 * 9 6 5 11 11 H 1.08001 * 120.00142 * 334.16795 * 10 9 6 12 12 C 1.39945 * 120.00198 * 154.17392 * 10 9 6 13 13 N 1.30826 * 119.99644 * 343.52367 * 12 10 9 14 14 Si 1.86803 * 120.00211 * 163.52860 * 12 10 9 15 15 H 1.48504 * 109.47051 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47276 * 119.99718 * 14 12 10 17 17 H 1.48497 * 109.47046 * 239.99761 * 14 12 10 18 18 C 1.37597 * 119.88203 * 90.00177 * 3 2 1 19 19 H 1.08996 * 109.46908 * 300.00232 * 1 2 3 20 20 H 1.08995 * 109.46543 * 60.00362 * 1 2 3 21 21 H 1.08994 * 109.46938 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47650 * 239.99754 * 2 1 3 23 23 H 1.09001 * 109.47181 * 119.99461 * 2 1 3 24 24 H 1.07996 * 119.75213 * 0.02562 * 4 3 2 25 25 H 1.07996 * 119.87618 * 179.76862 * 5 4 3 26 26 H 1.08994 * 109.47002 * 24.99826 * 7 6 5 27 27 H 1.09000 * 109.47222 * 145.00201 * 7 6 5 28 28 H 1.08994 * 109.47474 * 299.99824 * 8 7 6 29 29 H 1.08995 * 109.47286 * 60.00412 * 8 7 6 30 30 H 1.09007 * 109.46735 * 180.02562 * 8 7 6 31 31 H 0.96997 * 119.99687 * 179.97438 * 13 12 10 32 32 H 1.08007 * 120.11919 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2576 2.0737 -1.2024 5 6 2.7246 3.3787 -1.2176 6 6 2.9601 4.0447 -0.0363 7 6 3.4628 5.4652 -0.0560 8 6 4.9881 5.4680 0.0635 9 6 2.7299 3.3939 1.1898 10 6 2.9677 4.0682 2.4096 11 1 3.6847 4.8749 2.4499 12 6 2.2740 3.6904 3.5648 13 7 1.1954 2.9563 3.4694 14 14 2.8881 4.2343 5.2431 15 1 4.1184 5.0499 5.0795 16 1 1.8412 5.0460 5.9141 17 1 3.1934 3.0391 6.0697 18 6 2.2608 2.0671 1.1930 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8935 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 2.0715 1.5603 -2.1341 25 1 2.9002 3.8763 -2.1598 26 1 3.1707 5.9410 -0.9921 27 1 3.0318 6.0148 0.7809 28 1 5.2802 4.9922 0.9996 29 1 5.4191 4.9185 -0.7733 30 1 5.3517 6.4956 0.0497 31 1 0.7148 2.6941 4.2701 32 1 2.0813 1.5578 2.1284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221321656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = -27.337809 kcal Electronic energy + Delta-G solvation = -13055.231831 eV Core-core repulsion = 10978.519706 eV Total energy + Delta-G solvation = -2076.712124 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.80271 -36.05802 -35.29261 -32.88668 -31.34626 -29.15238 -27.14690 -24.90238 -22.88847 -22.82071 -20.65315 -18.76802 -17.06526 -16.19248 -16.06678 -15.54261 -14.79648 -14.51530 -14.36456 -13.81976 -13.81263 -13.65481 -13.14363 -12.85821 -12.80384 -12.59239 -12.19949 -12.00112 -11.98858 -11.81351 -11.61889 -11.15019 -10.98894 -10.85256 -9.19711 -8.92014 -8.54129 -6.24721 1.02269 1.18772 1.38042 1.51389 1.53595 2.22445 2.78993 3.75331 4.22845 4.26223 4.39430 4.45149 4.65249 4.66961 4.78527 4.82725 4.94868 5.04226 5.05936 5.11986 5.18689 5.24932 5.32315 5.43380 5.51596 5.54602 5.68197 5.86693 6.13888 6.25192 6.32802 6.50291 6.80006 7.04913 7.16499 8.40630 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.014542 C = 0.009457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.448637 B = 1925.061070 C = 2960.027617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.085 4.085 4 C -0.237 4.237 5 C -0.101 4.101 6 C -0.207 4.207 7 C -0.057 4.057 8 C -0.133 4.133 9 C 0.081 3.919 10 C -0.488 4.488 11 H 0.079 0.921 12 C 0.034 3.966 13 N -0.829 5.829 14 Si 0.973 3.027 15 H -0.257 1.257 16 H -0.268 1.268 17 H -0.268 1.268 18 C -0.185 4.185 19 H 0.033 0.967 20 H 0.051 0.949 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.283 0.717 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 -0.730 -2.848 3.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.085 4.085 4 C -0.256 4.256 5 C -0.119 4.119 6 C -0.208 4.208 7 C -0.095 4.095 8 C -0.190 4.190 9 C 0.079 3.921 10 C -0.518 4.518 11 H 0.097 0.903 12 C -0.180 4.180 13 N -0.456 5.456 14 Si 0.794 3.206 15 H -0.181 1.181 16 H -0.193 1.193 17 H -0.193 1.193 18 C -0.205 4.205 19 H 0.052 0.948 20 H 0.070 0.930 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.515 -0.826 -2.710 3.213 hybrid contribution -0.031 0.148 0.919 0.932 sum 1.484 -0.678 -1.790 2.422 Atomic orbital electron populations 1.21624 0.94649 1.01745 1.01024 1.20434 0.96431 0.92608 1.01628 1.19883 0.99010 0.96296 0.93305 1.20593 1.12171 0.96560 0.96296 1.20751 0.99675 0.94936 0.96584 1.20125 1.10804 0.97056 0.92856 1.20126 0.95954 0.92928 1.00464 1.21641 0.95196 1.01249 1.00934 1.17846 0.89772 0.91598 0.92859 1.19803 1.21631 1.16899 0.93494 0.90295 1.26697 0.93224 0.93527 1.04577 1.69911 1.13353 1.30084 1.32240 0.85296 0.79447 0.78945 0.76883 1.18079 1.19331 1.19285 1.21161 1.07787 0.95358 0.96197 0.94825 0.92970 0.90589 0.90455 0.92714 0.87089 0.86865 0.91895 0.93314 0.94400 0.93065 0.91399 0.90635 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.90 71.98 0.71 -3.85 16 2 C -0.07 -2.78 6.06 29.85 0.18 -2.60 16 3 C -0.08 -3.97 5.13 -19.92 -0.10 -4.07 16 4 C -0.24 -10.50 9.70 22.46 0.22 -10.28 16 5 C -0.10 -4.53 9.66 22.22 0.21 -4.32 16 6 C -0.21 -10.06 5.19 -19.40 -0.10 -10.16 16 7 C -0.06 -2.36 5.41 29.85 0.16 -2.20 16 8 C -0.13 -4.78 9.79 71.98 0.70 -4.07 16 9 C 0.08 4.43 5.56 -21.29 -0.12 4.31 16 10 C -0.49 -26.37 8.11 23.46 0.19 -26.18 16 11 H 0.08 4.11 6.09 -2.91 -0.02 4.09 16 12 C 0.03 1.72 5.16 85.26 0.44 2.16 16 13 N -0.83 -44.43 10.97 21.83 0.24 -44.19 16 14 Si 0.97 39.18 29.59 68.60 2.03 41.21 16 15 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 16 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 18 C -0.19 -9.98 8.32 22.73 0.19 -9.79 16 19 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 20 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 23 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 24 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 25 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 26 H 0.06 2.28 8.05 -2.39 -0.02 2.26 16 27 H 0.05 2.13 7.06 -2.39 -0.02 2.12 16 28 H 0.04 1.49 7.30 -2.39 -0.02 1.47 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 32 H 0.10 5.42 6.21 -2.91 -0.02 5.40 16 Total: -1.00 -58.71 265.86 6.04 -52.67 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.08 Total: 21.36 kcal Atomic # 6 Polarization: -73.74 SS G_CDS: 2.69 Total: -71.05 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.24 Total: -44.19 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -58.71 6.04 -52.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221321656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.332 kcal (2) G-P(sol) polarization free energy of solvation -58.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds