Wall clock time and date at job start Mon Mar 30 2020 02:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12402 * 1 3 3 N 1.12392 * 179.97438 * 2 1 4 4 C 1.33474 * 120.00290 * 0.49564 * 3 2 1 5 5 C 1.40884 * 120.32976 * 0.02562 * 4 3 2 6 6 C 1.36332 * 119.93363 * 180.02562 * 5 4 3 7 7 C 1.39008 * 120.63684 * 0.02562 * 6 5 4 8 8 C 1.37946 * 120.67547 * 359.97438 * 7 6 5 9 9 C 1.38908 * 120.03530 * 359.71823 * 8 7 6 10 10 O 1.35200 * 120.31368 * 180.29876 * 9 8 7 11 11 C 1.22386 * 116.99717 * 354.28793 * 10 9 8 12 12 H 1.08004 * 120.00097 * 5.09755 * 11 10 9 13 13 C 1.41492 * 119.99984 * 185.09708 * 11 10 9 14 14 N 1.29866 * 119.99930 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00029 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47386 * 60.00458 * 15 13 11 17 17 H 1.48507 * 109.47131 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47417 * 299.99932 * 15 13 11 19 19 H 1.08003 * 120.03268 * 359.97438 * 5 4 3 20 20 H 1.07997 * 119.68198 * 180.02562 * 6 5 4 21 21 H 1.07993 * 119.66499 * 179.97438 * 7 6 5 22 22 H 1.08002 * 119.98455 * 179.97438 * 8 7 6 23 23 H 0.96996 * 120.00232 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2479 0.0005 0.0000 4 6 2.9159 -1.1550 -0.0100 5 6 2.2191 -2.3795 -0.0211 6 6 2.9095 -3.5550 -0.0308 7 6 4.2996 -3.5602 -0.0292 8 6 5.0077 -2.3764 -0.0184 9 6 4.3327 -1.1624 -0.0149 10 8 5.0211 0.0012 -0.0104 11 6 6.2378 -0.0735 0.0989 12 1 6.7213 -1.0393 0.1033 13 6 7.0110 1.1053 0.2194 14 7 6.4296 2.2665 0.2146 15 14 8.8679 0.9912 0.3870 16 1 9.4320 0.3129 -0.8076 17 1 9.4398 2.3573 0.4972 18 1 9.2082 0.2129 1.6050 19 1 1.1391 -2.3868 -0.0212 20 1 2.3713 -4.4912 -0.0397 21 1 4.8306 -4.5005 -0.0365 22 1 6.0876 -2.3934 -0.0169 23 1 6.9596 3.0747 0.2969 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238547555.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:00 Heat of formation + Delta-G solvation = 127.637738 kcal Electronic energy + Delta-G solvation = -12408.844869 eV Core-core repulsion = 10034.053639 eV Total energy + Delta-G solvation = -2374.791229 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.25992 -42.01890 -39.07870 -37.27758 -34.63084 -31.49134 -30.98060 -27.41322 -25.18887 -23.32274 -21.05678 -20.29344 -19.16043 -19.13366 -18.18657 -17.13069 -16.45267 -16.27530 -16.01174 -15.54974 -15.23703 -14.49215 -13.73110 -13.45765 -12.82912 -12.64898 -12.53135 -12.14916 -11.39121 -11.22644 -11.09906 -10.88997 -9.58106 -8.60771 -8.57453 -5.76205 -0.04828 0.44244 0.61245 1.38567 1.51006 1.53660 1.76165 2.02855 2.16413 2.75497 3.16479 3.30242 3.94373 4.23682 4.33893 4.46387 4.64369 5.02778 5.04456 5.31846 5.41116 5.61387 5.72344 5.90962 6.16837 6.81239 8.06764 8.60458 8.66261 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.038506 B = 0.010442 C = 0.008245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.981601 B = 2680.938416 C = 3395.257464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 N 0.262 4.738 3 N -0.305 5.305 4 C -0.032 4.032 5 C -0.118 4.118 6 C -0.184 4.184 7 C -0.054 4.054 8 C -0.232 4.232 9 C 0.113 3.887 10 O -0.134 6.134 11 C -0.416 4.416 12 H 0.101 0.899 13 C -0.019 4.019 14 N -0.884 5.884 15 Si 1.015 2.985 16 H -0.255 1.255 17 H -0.272 1.272 18 H -0.255 1.255 19 H 0.124 0.876 20 H 0.153 0.847 21 H 0.157 0.843 22 H 0.138 0.862 23 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.202 -9.396 -0.021 9.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 N 0.267 4.733 3 N -0.206 5.206 4 C -0.135 4.135 5 C -0.142 4.142 6 C -0.204 4.204 7 C -0.073 4.073 8 C -0.252 4.252 9 C 0.054 3.946 10 O -0.031 6.031 11 C -0.495 4.495 12 H 0.118 0.882 13 C -0.223 4.223 14 N -0.517 5.517 15 Si 0.834 3.166 16 H -0.179 1.179 17 H -0.197 1.197 18 H -0.179 1.179 19 H 0.142 0.858 20 H 0.171 0.829 21 H 0.174 0.826 22 H 0.155 0.845 23 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.675 -8.246 -0.019 8.415 hybrid contribution 0.732 0.033 0.034 0.733 sum -0.943 -8.213 0.015 8.267 Atomic orbital electron populations 1.87399 0.88142 0.98553 1.43549 1.41200 1.01287 1.16525 1.14288 1.65470 0.88641 1.25822 1.40654 1.17474 0.90340 0.85722 1.19945 1.21165 0.98970 0.91694 1.02339 1.20567 0.94287 0.97422 1.08147 1.21339 0.94058 0.97419 0.94517 1.21061 1.00986 0.91305 1.11854 1.19664 0.89175 0.86594 0.99214 1.80371 1.21052 1.28753 1.72875 1.20312 0.82217 0.96284 1.50704 0.88231 1.26931 1.05999 0.92944 0.96465 1.69357 1.40217 0.99354 1.42753 0.84683 0.73235 0.78497 0.80201 1.17862 1.19685 1.17949 0.85766 0.82914 0.82555 0.84467 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.19 -6.41 20.43 37.02 0.76 -5.66 14 2 N 0.26 10.27 9.07 37.02 0.34 10.61 14 3 N -0.30 -13.87 10.81 -51.95 -0.56 -14.43 14 4 C -0.03 -1.41 6.65 40.39 0.27 -1.15 14 5 C -0.12 -4.19 9.40 22.47 0.21 -3.98 14 6 C -0.18 -5.55 9.96 22.01 0.22 -5.33 14 7 C -0.05 -1.67 10.03 22.39 0.22 -1.44 14 8 C -0.23 -9.26 9.12 22.36 0.20 -9.05 14 9 C 0.11 5.44 6.67 23.28 0.16 5.60 14 10 O -0.13 -7.67 8.95 57.59 0.52 -7.15 14 11 C -0.42 -22.58 9.22 68.62 0.63 -21.95 14 12 H 0.10 4.83 4.96 -2.91 -0.01 4.82 14 13 C -0.02 -1.02 5.54 85.79 0.48 -0.55 14 14 N -0.88 -51.00 13.60 22.08 0.30 -50.70 14 15 Si 1.02 39.46 29.57 68.60 2.03 41.48 14 16 H -0.25 -9.26 7.11 99.48 0.71 -8.56 14 17 H -0.27 -10.25 7.11 99.48 0.71 -9.54 14 18 H -0.26 -9.33 7.11 99.48 0.71 -8.62 14 19 H 0.12 3.91 7.36 -2.91 -0.02 3.89 14 20 H 0.15 3.35 8.06 -2.91 -0.02 3.33 14 21 H 0.16 3.49 8.06 -2.91 -0.02 3.46 14 22 H 0.14 5.29 5.70 -2.91 -0.02 5.27 14 23 H 0.28 14.89 8.27 -92.71 -0.77 14.12 14 Total: -1.00 -62.55 222.75 7.02 -55.53 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.25 Total: 8.17 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 2.39 Total: -37.85 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.83 Total: -60.18 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.52 Total: -7.15 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Total: -62.55 7.02 -55.53 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238547555.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.169 kcal (2) G-P(sol) polarization free energy of solvation -62.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds