Wall clock time and date at job start Mon Mar 30 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.64497 * 300.44738 * 9 7 2 11 11 C 1.55104 * 109.65228 * 60.76217 * 9 7 2 12 12 S 1.83836 * 101.18927 * 161.71383 * 11 9 7 13 13 O 1.42094 * 109.61679 * 211.05247 * 12 11 9 14 14 O 1.42102 * 109.61305 * 77.09340 * 12 11 9 15 15 C 1.83243 * 95.32249 * 324.07367 * 12 11 9 16 16 C 1.52967 * 109.65380 * 179.97438 * 9 7 2 17 17 H 1.09005 * 108.93148 * 89.62638 * 16 9 7 18 18 N 1.46902 * 108.93516 * 330.96878 * 16 9 7 19 19 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 20 20 H 1.08993 * 111.07435 * 279.69611 * 11 9 7 21 21 H 1.08996 * 111.07504 * 43.73601 * 11 9 7 22 22 H 1.08994 * 110.27227 * 261.33291 * 15 12 11 23 23 H 1.09005 * 110.26895 * 139.26651 * 15 12 11 24 24 H 1.00894 * 111.00177 * 179.97438 * 18 16 9 25 25 H 1.00907 * 110.99897 * 303.95660 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8784 -0.6732 -0.8844 11 6 4.0328 -0.4814 1.2753 12 16 5.7653 -1.0924 1.3426 13 8 6.1897 -1.1752 2.6962 14 8 6.5540 -0.3963 0.3872 15 6 5.3784 -2.7701 0.7156 16 6 4.0261 -2.6346 -0.0001 17 1 4.1391 -2.9696 -1.0312 18 7 3.0420 -3.4923 0.6737 19 1 -0.4850 0.8400 -0.0004 20 1 4.0033 0.6019 1.1587 21 1 3.4722 -0.7946 2.1561 22 1 5.2980 -3.4737 1.5441 23 1 6.1460 -3.0975 0.0143 24 1 3.3510 -4.4526 0.6909 25 1 2.8486 -3.1575 1.6057 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257817427.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:10 Heat of formation + Delta-G solvation = -86.604697 kcal Electronic energy + Delta-G solvation = -12201.248692 eV Core-core repulsion = 9920.318414 eV Total energy + Delta-G solvation = -2280.930278 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.80862 -38.03377 -37.03798 -34.57228 -32.37651 -29.85567 -27.44640 -24.83307 -21.02174 -19.88333 -18.87577 -18.00007 -17.20362 -16.74922 -16.39132 -16.09589 -15.33607 -14.96489 -14.60674 -14.34596 -13.47385 -13.28898 -13.12478 -13.08001 -12.74290 -12.40574 -12.33730 -11.89156 -11.38226 -11.33631 -10.90590 -10.66409 -9.24890 -8.18350 -6.18811 -0.84023 1.27236 1.37422 1.40712 1.58524 2.36316 2.65262 3.00119 3.18211 3.62977 3.85550 3.95927 4.07412 4.21085 4.25296 4.68832 4.86285 4.98937 5.43049 5.64406 6.36449 6.57079 6.88224 7.10767 7.45585 8.95543 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.039164 B = 0.016272 C = 0.012855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.775178 B = 1720.293533 C = 2177.566220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.020 3.980 3 Si 0.896 3.104 4 H -0.266 1.266 5 H -0.299 1.299 6 H -0.245 1.245 7 C -0.473 4.473 8 H 0.088 0.912 9 C 0.004 3.996 10 H 0.053 0.947 11 C -0.583 4.583 12 S 2.376 3.624 13 O -0.979 6.979 14 O -0.977 6.977 15 C -0.590 4.590 16 C 0.123 3.877 17 H 0.103 0.897 18 N -0.830 5.830 19 H 0.261 0.739 20 H 0.103 0.897 21 H 0.146 0.854 22 H 0.160 0.840 23 H 0.164 0.836 24 H 0.346 0.654 25 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.394 -5.575 2.004 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.177 4.177 3 Si 0.723 3.277 4 H -0.191 1.191 5 H -0.227 1.227 6 H -0.169 1.169 7 C -0.513 4.513 8 H 0.106 0.894 9 C -0.017 4.017 10 H 0.071 0.929 11 C -0.714 4.714 12 S 2.566 3.434 13 O -0.976 6.976 14 O -0.974 6.974 15 C -0.725 4.725 16 C 0.010 3.990 17 H 0.121 0.879 18 N -0.362 5.362 19 H 0.070 0.930 20 H 0.122 0.878 21 H 0.164 0.836 22 H 0.178 0.822 23 H 0.182 0.818 24 H 0.160 0.840 25 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.669 -4.798 1.733 11.826 hybrid contribution -0.047 0.772 0.488 0.915 sum 10.622 -4.026 2.222 11.574 Atomic orbital electron populations 1.69991 1.07729 1.27281 1.53530 1.25662 0.95048 1.01543 0.95475 0.86617 0.80190 0.81743 0.79114 1.19143 1.22662 1.16908 1.21216 0.88981 0.94388 1.46702 0.89405 1.19893 0.98160 0.92129 0.91541 0.92932 1.31088 1.21357 1.09190 1.09790 1.09295 0.78576 0.81206 0.74363 1.93512 1.81554 1.87082 1.35462 1.93532 1.67733 1.72853 1.63275 1.31122 1.08933 1.19401 1.13075 1.21292 0.84837 0.93437 0.99474 0.87930 1.58708 1.46588 1.05317 1.25554 0.92956 0.87835 0.83632 0.82247 0.81845 0.83965 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.14 13.96 21.45 0.30 -55.84 15 2 C 0.02 1.08 5.45 84.65 0.46 1.54 15 3 Si 0.90 41.81 24.30 68.60 1.67 43.47 15 4 H -0.27 -11.83 7.05 99.48 0.70 -11.13 15 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 15 6 H -0.25 -10.68 6.46 99.48 0.64 -10.04 15 7 C -0.47 -23.56 8.50 25.60 0.22 -23.34 15 8 H 0.09 4.76 6.72 -2.92 -0.02 4.74 15 9 C 0.00 0.14 1.92 -10.83 -0.02 0.12 15 10 H 0.05 2.11 7.17 -2.39 -0.02 2.09 15 11 C -0.58 -20.83 5.71 72.70 0.42 -20.42 15 12 S 2.38 71.69 6.05 -56.49 -0.34 71.34 15 13 O -0.98 -33.84 18.16 -127.52 -2.32 -36.15 15 14 O -0.98 -35.75 18.16 -127.52 -2.32 -38.06 15 15 C -0.59 -12.68 7.02 72.18 0.51 -12.17 15 16 C 0.12 3.59 3.52 45.10 0.16 3.75 15 17 H 0.10 2.82 8.14 -2.38 -0.02 2.80 15 18 N -0.83 -24.05 7.14 -167.88 -1.20 -25.25 15 19 H 0.26 14.86 8.31 -92.71 -0.77 14.09 15 20 H 0.10 3.94 4.49 -2.39 -0.01 3.93 15 21 H 0.15 4.87 8.10 -2.39 -0.02 4.85 15 22 H 0.16 2.59 7.86 -2.39 -0.02 2.57 15 23 H 0.16 2.59 8.14 -2.38 -0.02 2.57 15 24 H 0.35 7.42 8.97 -89.70 -0.80 6.62 15 25 H 0.35 9.97 8.79 -89.69 -0.79 9.19 15 Total: -1.00 -69.45 217.20 -2.90 -72.35 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -0.44 Total: 18.65 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 1.74 Total: -50.52 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -0.90 Total: -81.09 kcal Atomic # 8 Polarization: -69.58 SS G_CDS: -4.63 Total: -74.22 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.67 Total: 43.47 kcal Atomic # 16 Polarization: 71.69 SS G_CDS: -0.34 Total: 71.34 kcal Total: -69.45 -2.90 -72.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257817427.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.253 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds