Wall clock time and date at job start Mon Mar 30 2020 02:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99956 * 0.02562 * 7 2 1 10 10 H 1.09002 * 108.89568 * 61.32227 * 9 7 2 11 11 C 1.54211 * 108.92444 * 302.78708 * 9 7 2 12 12 S 1.83828 * 102.86186 * 214.21286 * 11 9 7 13 13 O 1.42096 * 109.80760 * 282.31302 * 12 11 9 14 14 O 1.42099 * 109.81033 * 147.96503 * 12 11 9 15 15 C 1.83822 * 94.23508 * 35.13800 * 12 11 9 16 16 C 1.52380 * 108.92759 * 179.97438 * 9 7 2 17 17 H 1.08999 * 108.92582 * 359.97438 * 16 9 7 18 18 N 1.46901 * 108.92346 * 241.34894 * 16 9 7 19 19 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 20 20 H 1.09001 * 110.73298 * 332.55280 * 11 9 7 21 21 H 1.09002 * 110.73559 * 95.87170 * 11 9 7 22 22 H 1.09000 * 110.73435 * 206.51783 * 15 12 11 23 23 H 1.08998 * 110.88996 * 83.27844 * 15 12 11 24 24 H 1.00900 * 110.99908 * 180.02562 * 18 16 9 25 25 H 1.00896 * 110.99932 * 303.95051 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6464 -2.5576 -0.9045 11 6 0.3165 -2.5370 1.2265 12 16 0.3266 -4.3149 1.6940 13 8 -0.5149 -5.0486 0.8150 14 8 0.1780 -4.4437 3.1013 15 6 2.0865 -4.5678 1.2275 16 6 2.2523 -3.6478 0.0005 17 1 3.2619 -3.2369 0.0001 18 7 2.0631 -4.4447 -1.2189 19 1 -0.4850 -0.8401 0.0004 20 1 0.7148 -1.9233 2.0345 21 1 -0.6890 -2.2150 0.9554 22 1 2.2684 -5.6080 0.9570 23 1 2.7508 -4.2587 2.0345 24 1 2.7121 -5.2166 -1.2508 25 1 1.1110 -4.7700 -1.2941 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257817429.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:13 Heat of formation + Delta-G solvation = -98.914563 kcal Electronic energy + Delta-G solvation = -12152.082012 eV Core-core repulsion = 9870.617938 eV Total energy + Delta-G solvation = -2281.464074 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.98424 -37.99126 -37.08622 -35.20121 -31.75426 -29.47898 -27.70503 -24.57333 -21.51606 -20.02596 -19.39473 -17.48074 -17.16369 -16.82530 -16.44868 -15.77646 -15.64939 -15.03378 -14.63108 -13.89198 -13.63840 -13.32903 -13.17327 -12.84572 -12.69965 -12.50937 -12.16588 -11.92036 -11.71768 -11.30413 -10.60587 -10.38525 -9.69199 -8.53575 -6.32400 -0.86008 1.51321 1.58398 1.64830 1.82666 2.57416 2.64508 2.94655 3.23091 3.60531 3.69843 3.88343 4.07582 4.21897 4.33186 4.68289 4.72778 5.28778 5.36802 5.99542 6.21125 6.23527 6.59445 6.68453 7.47387 8.82549 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.046639 B = 0.012515 C = 0.011252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.215567 B = 2236.798457 C = 2487.791901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.029 4.029 3 Si 1.109 2.891 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.595 4.595 8 H 0.061 0.939 9 C 0.029 3.971 10 H 0.027 0.973 11 C -0.548 4.548 12 S 2.373 3.627 13 O -0.969 6.969 14 O -0.982 6.982 15 C -0.587 4.587 16 C 0.115 3.885 17 H 0.102 0.898 18 N -0.848 5.848 19 H 0.266 0.734 20 H 0.122 0.878 21 H 0.110 0.890 22 H 0.159 0.841 23 H 0.160 0.840 24 H 0.355 0.645 25 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -7.410 1.891 9.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.229 4.229 3 Si 0.932 3.068 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.634 4.634 8 H 0.079 0.921 9 C 0.009 3.991 10 H 0.045 0.955 11 C -0.680 4.680 12 S 2.562 3.438 13 O -0.966 6.966 14 O -0.979 6.979 15 C -0.722 4.722 16 C 0.002 3.998 17 H 0.120 0.880 18 N -0.380 5.380 19 H 0.079 0.921 20 H 0.141 0.859 21 H 0.128 0.872 22 H 0.177 0.823 23 H 0.178 0.822 24 H 0.170 0.830 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.736 -5.786 1.883 7.710 hybrid contribution 0.094 -1.731 0.293 1.758 sum 4.830 -7.517 2.176 9.196 Atomic orbital electron populations 1.70932 1.08007 1.31000 1.47789 1.27097 0.96599 1.06240 0.92940 0.83009 0.74163 0.71726 0.77893 1.19915 1.21745 1.19270 1.22353 0.94479 0.91589 1.54985 0.92067 1.19036 0.92819 0.95554 0.91707 0.95545 1.30576 1.07984 1.20091 1.09369 1.09489 0.80463 0.79750 0.74103 1.93523 1.65587 1.70229 1.67283 1.93497 1.86849 1.86416 1.31168 1.31109 1.21272 1.09447 1.10385 1.21595 1.02288 0.90883 0.85081 0.88046 1.58911 1.10646 1.29548 1.38879 0.92127 0.85913 0.87180 0.82350 0.82201 0.82993 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.85 13.33 21.45 0.29 -53.56 15 2 C -0.03 -1.55 5.28 84.65 0.45 -1.11 15 3 Si 1.11 47.32 29.90 68.60 2.05 49.37 15 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 5 H -0.29 -12.80 7.11 99.48 0.71 -12.10 15 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 7 C -0.60 -30.00 8.33 25.60 0.21 -29.79 15 8 H 0.06 2.97 7.20 -2.91 -0.02 2.95 15 9 C 0.03 1.29 2.09 -11.34 -0.02 1.27 15 10 H 0.03 1.30 7.63 -2.39 -0.02 1.29 15 11 C -0.55 -22.58 5.58 72.39 0.40 -22.17 15 12 S 2.37 79.81 6.08 -56.49 -0.34 79.47 15 13 O -0.97 -36.70 17.99 -127.53 -2.29 -38.99 15 14 O -0.98 -37.96 18.17 -127.53 -2.32 -40.28 15 15 C -0.59 -15.25 7.05 72.41 0.51 -14.74 15 16 C 0.11 3.87 3.38 45.13 0.15 4.02 15 17 H 0.10 3.48 7.15 -2.39 -0.02 3.46 15 18 N -0.85 -25.93 9.00 -167.76 -1.51 -27.44 15 19 H 0.27 15.03 5.03 -92.71 -0.47 14.56 15 20 H 0.12 5.21 7.85 -2.39 -0.02 5.19 15 21 H 0.11 4.81 6.47 -2.39 -0.02 4.80 15 22 H 0.16 3.00 7.87 -2.39 -0.02 2.99 15 23 H 0.16 3.51 8.14 -2.39 -0.02 3.49 15 24 H 0.35 8.14 8.86 -89.69 -0.79 7.34 15 25 H 0.34 10.56 8.73 -89.70 -0.78 9.78 15 Total: -1.00 -67.80 222.43 -2.47 -70.28 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.05 Total: 23.68 kcal Atomic # 6 Polarization: -64.22 SS G_CDS: 1.70 Total: -62.52 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.22 Total: -81.01 kcal Atomic # 8 Polarization: -74.66 SS G_CDS: -4.61 Total: -79.27 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.05 Total: 49.37 kcal Atomic # 16 Polarization: 79.81 SS G_CDS: -0.34 Total: 79.47 kcal Total: -67.80 -2.47 -70.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257817429.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.636 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds