Wall clock time and date at job start Mon Mar 30 2020 02:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00228 * 2 1 4 4 H 1.48498 * 109.47263 * 269.99781 * 3 2 1 5 5 H 1.48500 * 109.47127 * 29.99807 * 3 2 1 6 6 H 1.48498 * 109.47368 * 149.99671 * 3 2 1 7 7 C 1.37876 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00614 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00190 * 359.97438 * 7 2 1 10 10 H 1.09000 * 108.77487 * 356.35605 * 9 7 2 11 11 C 1.54202 * 108.92827 * 237.75230 * 9 7 2 12 12 S 1.83816 * 102.86176 * 214.20942 * 11 9 7 13 13 O 1.42097 * 109.81363 * 282.31662 * 12 11 9 14 14 O 1.42104 * 109.81489 * 147.96671 * 12 11 9 15 15 C 1.83817 * 94.23607 * 35.14036 * 12 11 9 16 16 C 1.52376 * 108.92569 * 114.95579 * 9 7 2 17 17 H 1.08990 * 108.82296 * 241.41894 * 16 9 7 18 18 N 1.46906 * 108.92481 * 0.02562 * 16 9 7 19 19 H 0.96997 * 119.99843 * 0.02562 * 1 2 3 20 20 H 1.08999 * 110.73335 * 95.86874 * 11 9 7 21 21 H 1.08994 * 110.73572 * 332.55410 * 11 9 7 22 22 H 1.08998 * 110.74103 * 206.51713 * 15 12 11 23 23 H 1.08995 * 110.89159 * 83.27210 * 15 12 11 24 24 H 1.00902 * 110.99840 * 176.16166 * 18 16 9 25 25 H 1.00899 * 110.99559 * 300.11166 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.1837 -2.2881 0.0655 11 6 1.6754 -3.3218 1.2328 12 16 1.6026 -5.0518 0.6156 13 8 0.2521 -5.4916 0.5734 14 8 2.5915 -5.8375 1.2667 15 6 2.1689 -4.6157 -1.0779 16 6 1.5301 -3.2310 -1.3076 17 1 0.5912 -3.3597 -1.8460 18 7 2.4396 -2.4167 -2.1248 19 1 -0.4850 0.8400 -0.0004 20 1 0.9742 -3.1754 2.0543 21 1 2.6892 -3.0636 1.5386 22 1 1.7988 -5.3370 -1.8064 23 1 3.2562 -4.5507 -1.1195 24 1 2.6954 -2.9007 -2.9724 25 1 2.0325 -1.5168 -2.3310 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257817430.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:15 Heat of formation + Delta-G solvation = -66.696847 kcal Electronic energy + Delta-G solvation = -12058.733402 eV Core-core repulsion = 9778.666393 eV Total energy + Delta-G solvation = -2280.067009 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -36.97088 -36.31754 -35.40124 -32.55334 -30.58061 -28.35439 -25.43176 -23.11989 -19.34542 -18.33042 -16.74719 -16.07370 -15.35302 -15.20891 -14.70217 -14.46002 -14.19057 -13.08123 -12.73252 -11.99050 -11.84263 -11.63101 -11.47452 -11.12413 -10.91347 -10.84403 -10.60386 -10.39442 -9.93701 -9.26005 -9.06144 -8.64821 -7.67877 -6.17379 -4.15756 0.75453 3.09069 3.24350 3.31749 3.35889 4.22776 4.32467 4.59114 5.06775 5.26104 5.30919 5.66930 5.84348 5.93622 5.98222 6.27278 6.40185 7.01539 7.39432 7.80210 7.91075 8.30291 8.42159 8.93881 9.43773 10.91871 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.054464 B = 0.011417 C = 0.010900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.980109 B = 2451.801329 C = 2568.094434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.471 4.471 8 H 0.070 0.930 9 C 0.020 3.980 10 H 0.090 0.910 11 C -0.527 4.527 12 S 2.347 3.653 13 O -0.951 6.951 14 O -0.965 6.965 15 C -0.576 4.576 16 C 0.109 3.891 17 H 0.032 0.968 18 N -0.815 5.815 19 H 0.264 0.736 20 H 0.119 0.881 21 H 0.126 0.874 22 H 0.114 0.886 23 H 0.136 0.864 24 H 0.309 0.691 25 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -4.471 -2.361 5.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.511 4.511 8 H 0.088 0.912 9 C -0.001 4.001 10 H 0.108 0.892 11 C -0.661 4.661 12 S 2.535 3.465 13 O -0.948 6.948 14 O -0.962 6.962 15 C -0.706 4.706 16 C -0.004 4.004 17 H 0.050 0.950 18 N -0.347 5.347 19 H 0.074 0.926 20 H 0.137 0.863 21 H 0.145 0.855 22 H 0.132 0.868 23 H 0.155 0.845 24 H 0.120 0.880 25 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.887 -5.333 -1.299 6.202 hybrid contribution -0.119 1.595 -1.193 1.995 sum 2.768 -3.738 -2.491 5.276 Atomic orbital electron populations 1.69869 1.06004 1.27071 1.50863 1.25082 0.94948 0.99625 0.95047 0.86466 0.79756 0.82876 0.78143 1.20649 1.21516 1.19769 1.20824 0.93476 0.88235 1.48559 0.91172 1.19328 1.01779 0.94573 0.84425 0.89157 1.30440 1.10160 1.16384 1.09137 1.10130 0.75342 0.80712 0.80297 1.93561 1.33919 1.81192 1.86170 1.93523 1.61025 1.68953 1.72677 1.30484 1.11475 1.06332 1.22314 1.21546 0.92261 0.87765 0.98863 0.94965 1.58995 1.47536 1.06769 1.21363 0.92636 0.86298 0.85520 0.86774 0.84542 0.88008 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.10 12.58 55.43 0.70 -23.40 15 2 C 0.05 1.38 5.46 -17.82 -0.10 1.28 15 3 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.47 -11.43 5.81 -34.44 -0.20 -11.63 15 8 H 0.07 1.72 7.77 -52.49 -0.41 1.32 15 9 C 0.02 0.43 2.92 -91.46 -0.27 0.17 15 10 H 0.09 2.24 6.86 -51.93 -0.36 1.88 15 11 C -0.53 -9.97 6.85 37.79 0.26 -9.71 15 12 S 2.35 40.93 6.08 -107.50 -0.65 40.28 15 13 O -0.95 -19.33 18.16 -57.67 -1.05 -20.38 15 14 O -0.96 -18.89 18.17 -57.67 -1.05 -19.94 15 15 C -0.58 -9.09 6.96 37.79 0.26 -8.82 15 16 C 0.11 2.07 3.69 -67.39 -0.25 1.82 15 17 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 18 N -0.81 -14.92 7.96 -4.40 -0.03 -14.96 15 19 H 0.26 6.81 8.31 -40.82 -0.34 6.47 15 20 H 0.12 2.15 8.14 -51.93 -0.42 1.73 15 21 H 0.13 2.30 7.85 -51.93 -0.41 1.89 15 22 H 0.11 1.52 8.14 -51.93 -0.42 1.10 15 23 H 0.14 2.02 8.05 -51.93 -0.42 1.61 15 24 H 0.31 4.70 8.95 -39.29 -0.35 4.35 15 25 H 0.36 7.02 7.95 -39.29 -0.31 6.71 15 LS Contribution 225.66 15.07 3.40 3.40 Total: -1.00 -30.58 225.66 -6.65 -37.23 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.66 Total: 9.67 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -0.29 Total: -26.90 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.66 Total: -38.36 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -2.09 Total: -40.32 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.65 Total: 40.28 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.58 -6.65 -37.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257817430.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.462 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds