Wall clock time and date at job start Mon Mar 30 2020 02:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00228 * 2 1 4 4 H 1.48498 * 109.47263 * 269.99781 * 3 2 1 5 5 H 1.48500 * 109.47127 * 29.99807 * 3 2 1 6 6 H 1.48498 * 109.47368 * 149.99671 * 3 2 1 7 7 C 1.37876 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00614 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00190 * 359.97438 * 7 2 1 10 10 H 1.09000 * 108.77487 * 356.35605 * 9 7 2 11 11 C 1.54202 * 108.92827 * 237.75230 * 9 7 2 12 12 S 1.83816 * 102.86176 * 214.20942 * 11 9 7 13 13 O 1.42097 * 109.81363 * 282.31662 * 12 11 9 14 14 O 1.42104 * 109.81489 * 147.96671 * 12 11 9 15 15 C 1.83817 * 94.23607 * 35.14036 * 12 11 9 16 16 C 1.52376 * 108.92569 * 114.95579 * 9 7 2 17 17 H 1.08990 * 108.82296 * 241.41894 * 16 9 7 18 18 N 1.46906 * 108.92481 * 0.02562 * 16 9 7 19 19 H 0.96997 * 119.99843 * 0.02562 * 1 2 3 20 20 H 1.08999 * 110.73335 * 95.86874 * 11 9 7 21 21 H 1.08994 * 110.73572 * 332.55410 * 11 9 7 22 22 H 1.08998 * 110.74103 * 206.51713 * 15 12 11 23 23 H 1.08995 * 110.89159 * 83.27210 * 15 12 11 24 24 H 1.00902 * 110.99840 * 176.16166 * 18 16 9 25 25 H 1.00899 * 110.99559 * 300.11166 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.1837 -2.2881 0.0655 11 6 1.6754 -3.3218 1.2328 12 16 1.6026 -5.0518 0.6156 13 8 0.2521 -5.4916 0.5734 14 8 2.5915 -5.8375 1.2667 15 6 2.1689 -4.6157 -1.0779 16 6 1.5301 -3.2310 -1.3076 17 1 0.5912 -3.3597 -1.8460 18 7 2.4396 -2.4167 -2.1248 19 1 -0.4850 0.8400 -0.0004 20 1 0.9742 -3.1754 2.0543 21 1 2.6892 -3.0636 1.5386 22 1 1.7988 -5.3370 -1.8064 23 1 3.2562 -4.5507 -1.1195 24 1 2.6954 -2.9007 -2.9724 25 1 2.0325 -1.5168 -2.3310 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257817430.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:15 Heat of formation + Delta-G solvation = -91.833865 kcal Electronic energy + Delta-G solvation = -12059.823425 eV Core-core repulsion = 9778.666393 eV Total energy + Delta-G solvation = -2281.157032 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.54456 -37.87024 -36.94603 -34.36966 -32.17115 -29.81299 -27.19737 -24.74382 -20.97465 -19.79106 -18.52757 -17.56645 -16.92938 -16.71714 -16.37570 -16.01246 -15.75498 -14.66530 -14.39812 -13.55193 -13.29975 -13.20629 -13.02264 -12.82739 -12.62559 -12.45961 -12.31359 -12.04051 -11.44188 -11.08684 -10.73822 -10.53906 -9.16859 -8.08746 -6.10702 -0.69517 1.46253 1.50593 1.59067 1.67968 2.48716 2.78414 3.13242 3.25682 3.83362 3.91952 4.19270 4.32365 4.46807 4.56048 4.78902 4.96319 5.44003 5.61952 5.84643 6.21822 6.64988 6.98124 7.06849 7.51596 9.00625 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.054464 B = 0.011417 C = 0.010900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.980109 B = 2451.801329 C = 2568.094434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.007 3.993 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.465 4.465 8 H 0.068 0.932 9 C 0.009 3.991 10 H 0.054 0.946 11 C -0.539 4.539 12 S 2.384 3.616 13 O -0.979 6.979 14 O -0.979 6.979 15 C -0.553 4.553 16 C 0.106 3.894 17 H 0.031 0.969 18 N -0.818 5.818 19 H 0.260 0.740 20 H 0.118 0.882 21 H 0.135 0.865 22 H 0.150 0.850 23 H 0.156 0.844 24 H 0.331 0.669 25 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -5.303 -3.183 7.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.191 4.191 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.505 4.505 8 H 0.086 0.914 9 C -0.012 4.012 10 H 0.073 0.927 11 C -0.671 4.671 12 S 2.573 3.427 13 O -0.976 6.976 14 O -0.976 6.976 15 C -0.685 4.685 16 C -0.007 4.007 17 H 0.048 0.952 18 N -0.350 5.350 19 H 0.069 0.931 20 H 0.137 0.863 21 H 0.153 0.847 22 H 0.168 0.832 23 H 0.174 0.826 24 H 0.144 0.856 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.284 -6.172 -2.106 7.803 hybrid contribution -0.517 1.787 -0.963 2.094 sum 3.767 -4.385 -3.068 6.545 Atomic orbital electron populations 1.69999 1.07298 1.27259 1.53218 1.25695 0.95444 1.02370 0.95549 0.85605 0.78476 0.79643 0.78153 1.20009 1.22356 1.19470 1.21038 0.93363 0.89242 1.46836 0.91369 1.19324 0.99529 0.95120 0.87241 0.92719 1.30374 1.10561 1.18200 1.08007 1.08988 0.74155 0.78891 0.80633 1.93525 1.35822 1.81301 1.86926 1.93503 1.61258 1.68887 1.73987 1.30361 1.12567 1.04794 1.20772 1.21403 0.92984 0.89204 0.97149 0.95153 1.58891 1.46977 1.06535 1.22630 0.93103 0.86338 0.84692 0.83151 0.82564 0.85608 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.25 12.58 21.45 0.27 -50.98 15 2 C 0.01 0.34 5.46 84.65 0.46 0.80 15 3 Si 0.95 41.09 29.54 68.60 2.03 43.12 15 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 5 H -0.30 -13.07 7.11 99.48 0.71 -12.37 15 6 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 7 C -0.46 -22.36 5.81 25.60 0.15 -22.21 15 8 H 0.07 3.26 7.77 -2.91 -0.02 3.24 15 9 C 0.01 0.38 2.92 -11.34 -0.03 0.35 15 10 H 0.05 2.77 6.86 -2.39 -0.02 2.75 15 11 C -0.54 -19.96 6.85 72.39 0.50 -19.46 15 12 S 2.38 78.10 6.08 -56.49 -0.34 77.76 15 13 O -0.98 -38.33 18.16 -127.53 -2.32 -40.64 15 14 O -0.98 -35.86 18.17 -127.53 -2.32 -38.18 15 15 C -0.55 -15.34 6.96 72.39 0.50 -14.84 15 16 C 0.11 3.82 3.69 45.12 0.17 3.98 15 17 H 0.03 1.11 8.14 -2.39 -0.02 1.09 15 18 N -0.82 -28.05 7.96 -167.83 -1.34 -29.39 15 19 H 0.26 13.75 8.31 -92.71 -0.77 12.98 15 20 H 0.12 4.32 8.14 -2.39 -0.02 4.30 15 21 H 0.13 4.72 7.85 -2.39 -0.02 4.70 15 22 H 0.15 3.22 8.14 -2.39 -0.02 3.20 15 23 H 0.16 3.87 8.05 -2.39 -0.02 3.85 15 24 H 0.33 8.96 8.95 -89.69 -0.80 8.16 15 25 H 0.35 13.24 7.95 -89.69 -0.71 12.53 15 Total: -1.00 -64.07 225.66 -2.57 -66.64 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -0.30 Total: 23.04 kcal Atomic # 6 Polarization: -53.12 SS G_CDS: 1.74 Total: -51.38 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.07 Total: -80.36 kcal Atomic # 8 Polarization: -74.19 SS G_CDS: -4.63 Total: -78.82 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 78.10 SS G_CDS: -0.34 Total: 77.76 kcal Total: -64.07 -2.57 -66.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257817430.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.191 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds