Wall clock time and date at job start Mon Mar 30 2020 02:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86801 * 119.99777 * 2 1 4 4 H 1.48499 * 109.47447 * 275.41501 * 3 2 1 5 5 H 1.48494 * 109.47249 * 35.41900 * 3 2 1 6 6 H 1.48502 * 109.46847 * 155.41995 * 3 2 1 7 7 C 1.39859 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99795 * 341.78440 * 7 2 1 9 9 C 1.40955 * 119.99849 * 161.79715 * 7 2 1 10 10 C 1.41262 * 119.99307 * 329.91166 * 9 7 2 11 11 C 1.35672 * 120.35759 * 179.97438 * 10 9 7 12 12 C 1.40636 * 120.21855 * 0.02562 * 11 10 9 13 13 C 1.41621 * 133.27484 * 179.97438 * 12 11 10 14 14 C 1.34708 * 107.92881 * 180.26554 * 13 12 11 15 15 N 1.36595 * 109.67829 * 359.60307 * 14 13 12 16 16 H 0.97001 * 125.59204 * 180.12898 * 15 14 13 17 17 C 1.38148 * 108.80621 * 0.40195 * 15 14 13 18 18 C 1.38525 * 133.24804 * 179.72954 * 17 15 14 19 19 F 1.35107 * 120.24184 * 0.03611 * 18 17 15 20 20 H 0.96998 * 120.00119 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.82151 * 359.96309 * 10 9 7 22 22 H 1.07998 * 119.89521 * 180.02562 * 11 10 9 23 23 H 1.07997 * 126.03207 * 0.02562 * 13 12 11 24 24 H 1.07994 * 125.16264 * 179.76192 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3762 2.1126 -1.3938 5 1 1.5025 2.6169 0.8114 6 1 3.5932 1.4098 0.5824 7 6 2.0085 -1.2112 -0.0005 8 1 1.5091 -2.1231 0.2914 9 6 3.3651 -1.2415 -0.3819 10 6 3.8559 -0.3068 -1.3205 11 6 5.1604 -0.3290 -1.6924 12 6 6.0361 -1.2844 -1.1462 13 6 7.4138 -1.5557 -1.3299 14 6 7.7380 -2.6036 -0.5479 15 7 6.6357 -3.0205 0.1427 16 1 6.6097 -3.7573 0.7731 17 6 5.5626 -2.2247 -0.2088 18 6 4.2310 -2.2042 0.1724 19 9 3.7664 -3.1007 1.0702 20 1 -0.4850 0.8400 -0.0004 21 1 3.1890 0.4293 -1.7445 22 1 5.5278 0.3894 -2.4103 23 1 8.0851 -1.0198 -1.9845 24 1 8.7208 -3.0452 -0.4758 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257958156.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:58 Heat of formation + Delta-G solvation = -18.923027 kcal Electronic energy + Delta-G solvation = -12664.583348 eV Core-core repulsion = 10263.516805 eV Total energy + Delta-G solvation = -2401.066543 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.19583 -41.79480 -37.98416 -35.21575 -32.53014 -30.80093 -29.93722 -26.51211 -23.37943 -22.53617 -21.35878 -19.72049 -18.69589 -17.58139 -17.10541 -16.24561 -16.14278 -15.69376 -15.09150 -14.71383 -14.66947 -14.13226 -13.66894 -13.26505 -12.99308 -12.68250 -12.58395 -11.93356 -11.77495 -11.64544 -11.05791 -10.26619 -9.07690 -8.95722 -8.50245 -6.46273 0.36139 0.88564 1.26519 1.38681 1.51167 1.98001 2.12878 2.44242 2.63654 3.35775 3.92136 4.11891 4.36427 4.50716 4.65915 4.72390 4.95890 5.10689 5.23139 5.48886 5.64297 5.83405 5.84874 6.11664 6.15656 6.32244 6.62733 6.73812 6.91962 8.13124 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.012685 C = 0.010542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.054371 B = 2206.759439 C = 2655.455069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.048 3.952 3 Si 0.969 3.031 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.478 4.478 8 H 0.048 0.952 9 C 0.065 3.935 10 C -0.214 4.214 11 C -0.050 4.050 12 C -0.185 4.185 13 C -0.202 4.202 14 C 0.025 3.975 15 N -0.592 5.592 16 H 0.421 0.579 17 C 0.088 3.912 18 C -0.095 4.095 19 F -0.174 7.174 20 H 0.298 0.702 21 H 0.118 0.882 22 H 0.145 0.855 23 H 0.165 0.835 24 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.928 1.056 -2.260 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.168 4.168 3 Si 0.790 3.210 4 H -0.165 1.165 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.507 4.507 8 H 0.066 0.934 9 C 0.061 3.939 10 C -0.234 4.234 11 C -0.069 4.069 12 C -0.189 4.189 13 C -0.227 4.227 14 C -0.101 4.101 15 N -0.196 5.196 16 H 0.259 0.741 17 C -0.021 4.021 18 C -0.118 4.118 19 F -0.154 7.154 20 H 0.109 0.891 21 H 0.135 0.865 22 H 0.163 0.837 23 H 0.182 0.818 24 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 12.664 0.994 -2.140 12.882 hybrid contribution -0.779 -0.353 0.744 1.133 sum 11.886 0.641 -1.396 11.984 Atomic orbital electron populations 1.69741 1.09309 1.31950 1.35724 1.26922 0.95454 1.04371 0.90007 0.85464 0.79387 0.75600 0.80501 1.16461 1.19904 1.17890 1.19180 0.94130 0.95892 1.41487 0.93417 1.17552 0.92250 0.92074 0.92038 1.20706 0.96945 1.03284 1.02422 1.20398 0.91642 0.96809 0.98011 1.18285 0.96126 1.00552 1.03965 1.20878 0.93240 1.02025 1.06536 1.22408 0.92178 0.98801 0.96669 1.41848 1.07265 1.30349 1.40165 0.74129 1.18228 0.87724 0.96015 1.00133 1.16884 0.90242 1.01581 1.03140 1.91204 1.89898 1.67162 1.67128 0.89117 0.86488 0.83695 0.81767 0.77254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.64 13.93 21.82 0.30 -46.33 14 2 C 0.05 2.61 5.40 85.22 0.46 3.07 14 3 Si 0.97 42.12 24.50 68.60 1.68 43.80 14 4 H -0.24 -9.35 6.70 99.48 0.67 -8.68 14 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 14 6 H -0.26 -11.51 6.87 99.48 0.68 -10.83 14 7 C -0.48 -28.33 9.22 23.33 0.22 -28.12 14 8 H 0.05 3.13 7.96 -2.91 -0.02 3.11 14 9 C 0.07 3.54 5.10 -21.23 -0.11 3.43 14 10 C -0.21 -10.11 7.06 22.42 0.16 -9.95 14 11 C -0.05 -2.03 10.03 22.26 0.22 -1.81 14 12 C -0.18 -7.45 6.19 -21.19 -0.13 -7.58 14 13 C -0.20 -6.16 10.85 22.30 0.24 -5.92 14 14 C 0.02 0.65 11.84 83.14 0.98 1.63 14 15 N -0.59 -19.75 6.15 -187.34 -1.15 -20.91 14 16 H 0.42 11.80 8.96 -92.71 -0.83 10.97 14 17 C 0.09 3.88 7.23 38.88 0.28 4.16 14 18 C -0.09 -4.95 7.32 22.98 0.17 -4.78 14 19 F -0.17 -9.36 16.76 44.97 0.75 -8.60 14 20 H 0.30 14.59 8.30 -92.71 -0.77 13.82 14 21 H 0.12 5.26 4.72 -2.91 -0.01 5.25 14 22 H 0.15 4.63 8.06 -2.91 -0.02 4.61 14 23 H 0.16 3.82 8.06 -2.91 -0.02 3.80 14 24 H 0.21 3.21 8.06 -2.91 -0.02 3.19 14 Total: -1.00 -67.43 216.37 4.43 -63.01 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.35 Total: 14.89 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 2.49 Total: -45.85 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -0.85 Total: -67.24 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 0.75 Total: -8.60 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.68 Total: 43.80 kcal Total: -67.43 4.43 -63.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257958156.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.083 kcal (2) G-P(sol) polarization free energy of solvation -67.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds