Wall clock time and date at job start Mon Mar 30 2020 02:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30581 * 1 3 3 Si 1.86798 * 120.00121 * 2 1 4 4 H 1.48502 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47268 * 300.00188 * 3 2 1 6 6 H 1.48504 * 109.47043 * 60.00349 * 3 2 1 7 7 C 1.40251 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.41432 * 120.00317 * 359.97438 * 7 2 1 10 10 N 1.33579 * 119.12076 * 359.97438 * 9 7 2 11 11 C 1.31764 * 121.02941 * 179.79482 * 10 9 7 12 12 C 1.40229 * 118.82221 * 0.43507 * 11 10 9 13 13 C 1.40435 * 118.33449 * 359.57386 * 12 11 10 14 14 N 1.31098 * 119.59281 * 0.21141 * 13 12 11 15 15 C 1.50687 * 106.25113 * 180.24477 * 13 12 11 16 16 N 1.46778 * 106.26747 * 359.97438 * 15 13 12 17 17 C 1.34475 * 108.85587 * 0.02562 * 16 15 13 18 18 O 1.21584 * 124.84544 * 180.02562 * 17 16 15 19 19 H 0.97006 * 119.99568 * 359.97438 * 1 2 3 20 20 H 1.07993 * 120.59002 * 180.02562 * 11 10 9 21 21 H 1.08999 * 110.09470 * 119.20260 * 15 13 12 22 22 H 1.09002 * 110.09294 * 240.74047 * 15 13 12 23 23 H 0.97001 * 125.56683 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 3.6998 1.3463 -0.0006 5 1 1.8811 2.3965 -1.2125 6 1 1.8811 2.3964 1.2126 7 6 2.0070 -1.2147 -0.0005 8 1 3.0870 -1.2147 -0.0010 9 6 1.2998 -2.4395 -0.0005 10 7 -0.0358 -2.4190 0.0005 11 6 -0.7323 -3.5375 -0.0035 12 6 -0.0468 -4.7608 0.0004 13 6 1.3574 -4.7379 -0.0007 14 7 1.9862 -3.5876 -0.0012 15 6 1.8026 -6.1775 -0.0021 16 7 0.5779 -6.9866 -0.0009 17 6 -0.4862 -6.1644 0.0003 18 8 -1.6460 -6.5292 0.0018 19 1 -0.4850 0.8401 0.0004 20 1 -1.8119 -3.5126 -0.0030 21 1 2.3896 -6.3872 -0.8962 22 1 2.3920 -6.3880 0.8904 23 1 0.5421 -7.9559 -0.0010 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259480770.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:42 Heat of formation + Delta-G solvation = 19.069335 kcal Electronic energy + Delta-G solvation = -12520.046337 eV Core-core repulsion = 10140.547228 eV Total energy + Delta-G solvation = -2379.499109 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.20217 -37.94272 -35.40853 -33.86146 -31.94935 -30.24961 -26.91533 -26.47264 -23.11100 -21.65020 -19.61538 -17.89631 -17.08067 -15.77518 -15.55391 -15.16572 -14.71649 -14.33547 -13.18946 -12.89030 -12.81719 -12.60526 -11.94922 -11.50864 -11.45003 -11.01447 -10.52489 -10.24812 -9.72176 -9.36675 -8.76532 -8.64352 -8.20083 -7.55945 -6.85273 -5.06930 1.91666 2.70121 2.89396 2.90961 2.97593 3.65625 3.78150 3.78974 4.47540 4.70022 5.50170 5.53851 5.63590 5.81025 5.86622 6.19329 6.52649 6.70877 6.92707 7.25432 7.46517 7.55255 7.87520 8.16793 8.24228 8.78719 9.00927 9.80403 9.97564 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.072857 B = 0.009052 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.221186 B = 3092.478080 C = 3461.514699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.686 5.686 2 C 0.057 3.943 3 Si 0.926 3.074 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.363 4.363 8 H 0.102 0.898 9 C 0.387 3.613 10 N -0.511 5.511 11 C 0.235 3.765 12 C -0.432 4.432 13 C 0.196 3.804 14 N -0.572 5.572 15 C 0.164 3.836 16 N -0.740 5.740 17 C 0.582 3.418 18 O -0.566 6.566 19 H 0.283 0.717 20 H 0.139 0.861 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 -2.628 -0.014 4.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.173 4.173 3 Si 0.749 3.251 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.120 0.880 9 C 0.157 3.843 10 N -0.228 5.228 11 C 0.057 3.943 12 C -0.447 4.447 13 C 0.037 3.963 14 N -0.292 5.292 15 C 0.038 3.962 16 N -0.398 5.398 17 C 0.374 3.626 18 O -0.448 6.448 19 H 0.094 0.906 20 H 0.156 0.844 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.924 -1.522 -0.011 4.209 hybrid contribution -0.153 -0.627 -0.001 0.646 sum 3.771 -2.149 -0.011 4.340 Atomic orbital electron populations 1.70085 1.07619 1.29144 1.23726 1.26306 0.95213 1.02002 0.93802 0.85946 0.80805 0.79372 0.79003 1.17793 1.19315 1.19310 1.19710 0.95315 0.87448 1.37035 0.88026 1.20056 0.85941 0.89989 0.88328 1.69464 1.07868 1.25916 1.19513 1.22686 0.99399 0.86284 0.85978 1.21015 0.97559 0.94740 1.31365 1.21225 0.91348 0.93650 0.90060 1.67729 1.40947 0.96885 1.23670 1.19974 0.86885 0.86571 1.02738 1.45731 1.07165 1.08293 1.78589 1.18044 0.83996 0.86505 0.74006 1.90675 1.18791 1.81920 1.53366 0.90564 0.84390 0.89268 0.89269 0.74673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.86 11.41 55.56 0.63 -16.22 14 2 C 0.06 1.32 5.50 -17.33 -0.10 1.23 14 3 Si 0.93 16.88 29.56 -169.99 -5.02 11.86 14 4 H -0.25 -4.55 7.11 56.52 0.40 -4.15 14 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 14 6 H -0.27 -4.80 7.11 56.52 0.40 -4.40 14 7 C -0.36 -9.18 9.37 -37.61 -0.35 -9.54 14 8 H 0.10 2.42 7.85 -52.49 -0.41 2.01 14 9 C 0.39 10.43 7.36 -157.99 -1.16 9.26 14 10 N -0.51 -13.82 7.83 -12.32 -0.10 -13.92 14 11 C 0.23 5.86 11.38 -16.83 -0.19 5.66 14 12 C -0.43 -10.24 6.35 -104.74 -0.66 -10.91 14 13 C 0.20 4.40 7.62 -82.08 -0.63 3.78 14 14 N -0.57 -14.37 10.35 -8.65 -0.09 -14.46 14 15 C 0.16 2.67 7.75 -5.05 -0.04 2.64 14 16 N -0.74 -12.34 6.41 -62.58 -0.40 -12.74 14 17 C 0.58 12.72 8.33 -12.81 -0.11 12.61 14 18 O -0.57 -13.83 18.05 5.29 0.10 -13.74 14 19 H 0.28 6.14 8.29 -40.82 -0.34 5.80 14 20 H 0.14 3.16 8.06 -52.49 -0.42 2.74 14 21 H 0.09 1.24 8.14 -51.93 -0.42 0.82 14 22 H 0.09 1.24 8.14 -51.93 -0.42 0.82 14 23 H 0.41 5.40 8.96 -40.82 -0.37 5.03 14 LS Contribution 218.04 15.07 3.29 3.29 Total: -1.00 -30.91 218.04 -6.02 -36.93 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -1.18 Total: 4.27 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: -3.24 Total: 14.74 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.05 Total: -57.34 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.10 Total: -13.74 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.02 Total: 11.86 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -30.91 -6.02 -36.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259480770.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.000 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds