Wall clock time and date at job start Mon Mar 30 2020 02:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30581 * 1 3 3 Si 1.86798 * 120.00121 * 2 1 4 4 H 1.48502 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47268 * 300.00188 * 3 2 1 6 6 H 1.48504 * 109.47043 * 60.00349 * 3 2 1 7 7 C 1.40251 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.41432 * 120.00317 * 359.97438 * 7 2 1 10 10 N 1.33579 * 119.12076 * 359.97438 * 9 7 2 11 11 C 1.31764 * 121.02941 * 179.79482 * 10 9 7 12 12 C 1.40229 * 118.82221 * 0.43507 * 11 10 9 13 13 C 1.40435 * 118.33449 * 359.57386 * 12 11 10 14 14 N 1.31098 * 119.59281 * 0.21141 * 13 12 11 15 15 C 1.50687 * 106.25113 * 180.24477 * 13 12 11 16 16 N 1.46778 * 106.26747 * 359.97438 * 15 13 12 17 17 C 1.34475 * 108.85587 * 0.02562 * 16 15 13 18 18 O 1.21584 * 124.84544 * 180.02562 * 17 16 15 19 19 H 0.97006 * 119.99568 * 359.97438 * 1 2 3 20 20 H 1.07993 * 120.59002 * 180.02562 * 11 10 9 21 21 H 1.08999 * 110.09470 * 119.20260 * 15 13 12 22 22 H 1.09002 * 110.09294 * 240.74047 * 15 13 12 23 23 H 0.97001 * 125.56683 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 3.6998 1.3463 -0.0006 5 1 1.8811 2.3965 -1.2125 6 1 1.8811 2.3964 1.2126 7 6 2.0070 -1.2147 -0.0005 8 1 3.0870 -1.2147 -0.0010 9 6 1.2998 -2.4395 -0.0005 10 7 -0.0358 -2.4190 0.0005 11 6 -0.7323 -3.5375 -0.0035 12 6 -0.0468 -4.7608 0.0004 13 6 1.3574 -4.7379 -0.0007 14 7 1.9862 -3.5876 -0.0012 15 6 1.8026 -6.1775 -0.0021 16 7 0.5779 -6.9866 -0.0009 17 6 -0.4862 -6.1644 0.0003 18 8 -1.6460 -6.5292 0.0018 19 1 -0.4850 0.8401 0.0004 20 1 -1.8119 -3.5126 -0.0030 21 1 2.3896 -6.3872 -0.8962 22 1 2.3920 -6.3880 0.8904 23 1 0.5421 -7.9559 -0.0010 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259480770.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:42 Heat of formation + Delta-G solvation = -4.839300 kcal Electronic energy + Delta-G solvation = -12521.083093 eV Core-core repulsion = 10140.547228 eV Total energy + Delta-G solvation = -2380.535865 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.92594 -39.72673 -37.10849 -35.63868 -33.82044 -32.02157 -28.75206 -28.00674 -24.93977 -23.42558 -21.32799 -19.68519 -18.76969 -17.55678 -17.24045 -16.71026 -16.47124 -15.95704 -14.79221 -14.73837 -14.50177 -14.14723 -13.67639 -13.15365 -12.94579 -12.85619 -12.20437 -11.89063 -11.39854 -11.26639 -10.56946 -10.11984 -10.04879 -9.44016 -8.63256 -6.97873 0.10049 0.86895 1.40926 1.45028 1.60536 2.05136 2.14261 2.36537 2.69572 3.08153 3.71155 3.83227 3.91353 4.25862 4.49218 4.57017 4.80976 4.92012 5.11736 5.45340 5.82565 5.99445 6.15770 6.29468 6.39417 6.92610 7.41711 7.99612 8.16067 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.072857 B = 0.009052 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.221186 B = 3092.478080 C = 3461.514699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.015 3.985 3 Si 1.010 2.990 4 H -0.247 1.247 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.385 4.385 8 H 0.109 0.891 9 C 0.353 3.647 10 N -0.540 5.540 11 C 0.216 3.784 12 C -0.455 4.455 13 C 0.189 3.811 14 N -0.589 5.589 15 C 0.171 3.829 16 N -0.711 5.711 17 C 0.580 3.420 18 O -0.599 6.599 19 H 0.293 0.707 20 H 0.144 0.856 21 H 0.128 0.872 22 H 0.128 0.872 23 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.866 -3.001 -0.015 6.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.212 4.212 3 Si 0.827 3.173 4 H -0.170 1.170 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.417 4.417 8 H 0.127 0.873 9 C 0.123 3.877 10 N -0.258 5.258 11 C 0.039 3.961 12 C -0.469 4.469 13 C 0.031 3.969 14 N -0.309 5.309 15 C 0.047 3.953 16 N -0.369 5.369 17 C 0.371 3.629 18 O -0.483 6.483 19 H 0.105 0.895 20 H 0.162 0.838 21 H 0.145 0.855 22 H 0.145 0.855 23 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 5.674 -1.970 -0.012 6.006 hybrid contribution -0.712 -0.584 -0.001 0.921 sum 4.962 -2.554 -0.012 5.581 Atomic orbital electron populations 1.70143 1.09458 1.30919 1.23839 1.27366 0.95977 1.05310 0.92498 0.84745 0.79364 0.73879 0.79318 1.16996 1.18505 1.18498 1.20155 0.95901 0.88196 1.37493 0.87310 1.20560 0.86337 0.91429 0.89346 1.69435 1.08373 1.26944 1.21015 1.22926 0.99927 0.87047 0.86248 1.21337 0.98659 0.95474 1.31442 1.22161 0.91172 0.95638 0.87971 1.67805 1.40796 0.97345 1.24969 1.20283 0.86634 0.82178 1.06254 1.45515 1.05862 1.09137 1.76383 1.17879 0.84426 0.86363 0.74249 1.90656 1.20279 1.82207 1.55175 0.89513 0.83824 0.85467 0.85468 0.72022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -36.18 11.41 21.87 0.25 -35.93 14 2 C 0.01 0.69 5.50 85.37 0.47 1.16 14 3 Si 1.01 33.92 29.56 68.60 2.03 35.94 14 4 H -0.25 -7.91 7.11 99.48 0.71 -7.20 14 5 H -0.26 -8.38 7.11 99.48 0.71 -7.68 14 6 H -0.26 -8.38 7.11 99.48 0.71 -7.67 14 7 C -0.39 -19.76 9.37 23.55 0.22 -19.54 14 8 H 0.11 5.20 7.85 -2.91 -0.02 5.18 14 9 C 0.35 19.45 7.36 134.98 0.99 20.44 14 10 N -0.54 -30.21 7.83 -192.90 -1.51 -31.72 14 11 C 0.22 11.13 11.38 85.19 0.97 12.10 14 12 C -0.46 -21.57 6.35 -19.94 -0.13 -21.69 14 13 C 0.19 8.27 7.62 43.20 0.33 8.59 14 14 N -0.59 -29.53 10.35 -181.29 -1.88 -31.40 14 15 C 0.17 4.90 7.75 85.58 0.66 5.57 14 16 N -0.71 -21.31 6.41 -470.32 -3.01 -24.33 14 17 C 0.58 24.62 8.33 86.61 0.72 25.35 14 18 O -0.60 -29.03 18.05 -3.98 -0.07 -29.10 14 19 H 0.29 12.88 8.29 -92.70 -0.77 12.11 14 20 H 0.14 6.92 8.06 -2.91 -0.02 6.90 14 21 H 0.13 2.88 8.14 -2.39 -0.02 2.86 14 22 H 0.13 2.88 8.14 -2.39 -0.02 2.86 14 23 H 0.44 9.59 8.96 -92.71 -0.83 8.76 14 Total: -1.00 -68.92 218.04 0.48 -68.44 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.44 Total: 16.12 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: 4.24 Total: 31.98 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -6.15 Total: -123.38 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.07 Total: -29.10 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.94 kcal Total: -68.92 0.48 -68.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259480770.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.599 kcal (2) G-P(sol) polarization free energy of solvation -68.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds