Wall clock time and date at job start Mon Mar 30 2020 02:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86810 * 120.00074 * 2 1 4 4 H 1.48499 * 109.46885 * 239.99841 * 3 2 1 5 5 H 1.48500 * 109.46787 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47202 * 119.99617 * 3 2 1 7 7 C 1.38644 * 120.00457 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00655 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99403 * 0.28093 * 7 2 1 10 10 C 1.35798 * 116.99636 * 174.64063 * 9 7 2 11 11 C 1.39321 * 119.85938 * 185.52838 * 10 9 7 12 12 C 1.37791 * 120.40470 * 179.97438 * 11 10 9 13 13 C 1.38729 * 119.96785 * 0.02562 * 12 11 10 14 14 O 1.35180 * 133.84804 * 179.97438 * 13 12 11 15 15 C 1.34210 * 108.16700 * 180.02562 * 14 13 12 16 16 N 1.29913 * 110.29632 * 359.97438 * 15 14 13 17 17 C 1.36074 * 108.80738 * 359.97438 * 16 15 14 18 18 C 1.38309 * 119.86746 * 5.25871 * 10 9 7 19 19 H 0.97000 * 120.00189 * 0.02562 * 1 2 3 20 20 H 1.07998 * 119.79748 * 0.02562 * 11 10 9 21 21 H 1.07997 * 120.00895 * 180.02562 * 12 11 10 22 22 H 1.07999 * 124.85402 * 180.02562 * 15 14 13 23 23 H 1.07999 * 120.15883 * 359.97438 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3682 -0.0047 10 6 2.0704 -3.5042 -0.1168 11 6 1.4304 -4.7351 -0.2447 12 6 2.1657 -5.8948 -0.3598 13 6 3.5519 -5.8404 -0.3482 14 8 4.5264 -6.7728 -0.4386 15 6 5.7118 -6.1473 -0.3694 16 7 5.5385 -4.8663 -0.2402 17 6 4.2034 -4.6040 -0.2207 18 6 3.4516 -3.4340 -0.1093 19 1 -0.4850 0.8400 -0.0004 20 1 0.3514 -4.7806 -0.2544 21 1 1.6630 -6.8455 -0.4589 22 1 6.6725 -6.6385 -0.4153 23 1 3.9458 -2.4783 -0.0150 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259498749.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:02 Heat of formation + Delta-G solvation = 13.894086 kcal Electronic energy + Delta-G solvation = -12394.406217 eV Core-core repulsion = 9982.389942 eV Total energy + Delta-G solvation = -2412.016275 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.55694 -38.67449 -35.79348 -34.09735 -32.30836 -29.47409 -28.59685 -25.54283 -23.05736 -22.01240 -21.25813 -18.44563 -17.64885 -16.72080 -16.08237 -16.06155 -14.63466 -14.15634 -13.72290 -13.64150 -13.40351 -12.86311 -11.87655 -11.71526 -11.37683 -11.13160 -11.06650 -10.65889 -10.51920 -10.11215 -9.46191 -8.88736 -7.95719 -7.33894 -6.52623 -4.11557 1.29697 2.08252 3.00623 3.12109 3.13760 3.15188 3.16450 3.91911 4.35337 4.41646 4.97684 5.08181 5.25462 5.65876 5.79422 5.88834 6.14302 6.33981 6.73624 6.80015 6.84975 7.00093 7.25079 7.39636 7.91412 8.13720 8.92646 9.56851 10.64475 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.055749 B = 0.008756 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.130281 B = 3196.883464 C = 3686.624809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.095 0.905 9 O -0.168 6.168 10 C 0.147 3.853 11 C -0.136 4.136 12 C -0.061 4.061 13 C -0.074 4.074 14 O -0.226 6.226 15 C 0.208 3.792 16 N -0.493 5.493 17 C 0.067 3.933 18 C -0.200 4.200 19 H 0.272 0.728 20 H 0.138 0.862 21 H 0.128 0.872 22 H 0.245 0.755 23 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 -8.123 -0.700 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.092 3.908 11 C -0.155 4.155 12 C -0.080 4.080 13 C -0.122 4.122 14 O -0.118 6.118 15 C -0.023 4.023 16 N -0.224 5.224 17 C -0.044 4.044 18 C -0.221 4.221 19 H 0.082 0.918 20 H 0.156 0.844 21 H 0.146 0.854 22 H 0.261 0.739 23 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.025 -7.442 -0.628 9.596 hybrid contribution 0.232 0.251 -0.060 0.347 sum 6.258 -7.191 -0.688 9.557 Atomic orbital electron populations 1.70026 1.05997 1.28058 1.45232 1.25312 0.95870 0.98914 0.96187 0.85753 0.78726 0.79447 0.79414 1.19348 1.20181 1.19335 1.21348 0.92018 0.80608 1.52974 0.88795 1.84007 1.33811 1.11320 1.77968 1.19000 0.89478 0.88423 0.93930 1.20210 1.00007 0.89200 1.06101 1.19357 0.87437 0.98463 1.02703 1.19990 0.90933 0.87128 1.14188 1.84380 1.15263 1.37269 1.74849 1.27961 0.89636 0.87653 0.97052 1.70538 1.17287 1.14788 1.19828 1.19474 0.88043 0.94181 1.02679 1.20110 0.92434 0.96771 1.12790 0.91781 0.84406 0.85410 0.73885 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.64 13.67 55.48 0.76 -23.88 14 2 C 0.04 1.15 5.49 -17.52 -0.10 1.05 14 3 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 14 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 14 5 H -0.28 -5.82 7.11 56.52 0.40 -5.41 14 6 H -0.27 -5.66 7.11 56.52 0.40 -5.25 14 7 C -0.39 -10.89 9.48 30.88 0.29 -10.60 14 8 H 0.09 2.45 5.19 -52.49 -0.27 2.17 14 9 O -0.17 -4.67 9.75 -0.08 0.00 -4.68 14 10 C 0.15 3.51 6.64 -39.15 -0.26 3.25 14 11 C -0.14 -2.73 9.97 -39.34 -0.39 -3.12 14 12 C -0.06 -1.08 10.05 -39.56 -0.40 -1.48 14 13 C -0.07 -1.43 7.43 -38.61 -0.29 -1.72 14 14 O -0.23 -3.80 10.77 3.48 0.04 -3.77 14 15 C 0.21 3.04 13.12 51.95 0.68 3.73 14 16 N -0.49 -9.46 11.34 -12.56 -0.14 -9.60 14 17 C 0.07 1.43 7.23 -84.72 -0.61 0.82 14 18 C -0.20 -4.65 9.21 -39.08 -0.36 -5.01 14 19 H 0.27 7.17 8.31 -40.82 -0.34 6.83 14 20 H 0.14 2.48 8.06 -52.49 -0.42 2.05 14 21 H 0.13 1.82 8.06 -52.49 -0.42 1.40 14 22 H 0.25 1.94 8.06 -52.49 -0.42 1.52 14 23 H 0.14 3.28 5.61 -52.49 -0.29 2.99 14 LS Contribution 218.32 15.07 3.29 3.29 Total: -1.00 -31.85 218.32 -3.48 -35.33 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -0.97 Total: 1.02 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -1.43 Total: -13.09 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.62 Total: -33.48 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.04 Total: -8.44 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -31.85 -3.48 -35.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498749.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.228 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds