Wall clock time and date at job start Mon Mar 30 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48504 * 109.47221 * 270.00568 * 3 2 1 5 5 H 1.48502 * 109.46997 * 30.00196 * 3 2 1 6 6 H 1.48503 * 109.46992 * 150.00563 * 3 2 1 7 7 C 1.40112 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.39964 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.39656 * 127.06123 * 359.97438 * 9 7 2 11 11 N 1.32956 * 107.62133 * 180.02562 * 10 9 7 12 12 C 1.31074 * 110.08710 * 359.71741 * 11 10 9 13 13 N 1.35770 * 109.52672 * 0.45633 * 12 11 10 14 14 C 1.39594 * 126.55742 * 179.82041 * 13 12 11 15 15 C 1.35186 * 126.51798 * 309.68336 * 14 13 12 16 16 N 1.34424 * 107.58047 * 180.02562 * 15 14 13 17 17 C 1.30241 * 108.79584 * 0.02562 * 16 15 14 18 18 O 1.34153 * 108.90783 * 0.26173 * 17 16 15 19 19 H 0.96998 * 119.99857 * 359.97438 * 1 2 3 20 20 H 1.08004 * 126.18299 * 0.05076 * 10 9 7 21 21 H 1.08001 * 125.23974 * 180.27477 * 12 11 10 22 22 H 1.08000 * 126.20324 * 0.04879 * 15 14 13 23 23 H 1.08002 * 125.54255 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4399 2.6526 0.7001 6 1 3.5400 1.4401 0.6999 7 6 2.0089 -1.2134 -0.0005 8 1 3.0889 -1.2135 -0.0010 9 6 1.3091 -2.4255 -0.0005 10 6 -0.0769 -2.5972 0.0005 11 7 -0.3206 -3.9042 0.0006 12 6 0.8070 -4.5724 -0.0063 13 7 1.8498 -3.7029 -0.0011 14 6 3.2064 -4.0316 -0.0022 15 6 3.8245 -4.8997 0.8296 16 7 5.1261 -4.9262 0.4948 17 6 5.3195 -4.1112 -0.5025 18 8 4.1511 -3.5381 -0.8285 19 1 -0.4850 0.8400 0.0004 20 1 -0.8168 -1.8104 0.0006 21 1 0.8934 -5.6489 -0.0119 22 1 3.3571 -5.4690 1.6195 23 1 6.2672 -3.9234 -0.9853 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259544618.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:55 Heat of formation + Delta-G solvation = 84.530092 kcal Electronic energy + Delta-G solvation = -12714.196731 eV Core-core repulsion = 10337.536214 eV Total energy + Delta-G solvation = -2376.660517 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.94740 -40.08255 -34.40909 -33.89726 -32.87050 -29.15272 -27.85971 -24.97990 -22.57004 -22.39428 -20.00983 -19.67128 -18.28853 -16.79768 -16.19735 -15.93696 -14.84553 -14.32830 -13.51424 -13.26632 -13.02085 -12.62879 -12.16837 -11.40455 -11.14747 -11.09927 -10.95829 -10.46239 -10.42588 -9.62376 -9.40278 -8.56828 -7.95636 -7.22874 -6.87959 -4.49116 1.70738 2.54831 2.83834 2.97266 2.98069 3.02230 3.52217 3.78100 4.25675 4.52587 4.70259 5.16403 5.37201 5.74722 5.99683 6.11805 6.61145 6.69209 6.89691 7.31769 7.41334 7.69873 7.99373 8.23502 8.59137 8.73981 8.79620 9.64742 10.05949 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.013518 C = 0.009783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.938757 B = 2070.787347 C = 2861.370984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.072 3.928 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.427 4.427 8 H 0.075 0.925 9 C 0.185 3.815 10 C -0.142 4.142 11 N -0.454 5.454 12 C 0.050 3.950 13 N -0.427 5.427 14 C 0.228 3.772 15 C -0.060 4.060 16 N -0.476 5.476 17 C 0.153 3.847 18 O -0.207 6.207 19 H 0.285 0.715 20 H 0.192 0.808 21 H 0.177 0.823 22 H 0.185 0.815 23 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.162 -1.458 -0.711 7.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.147 4.147 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.461 4.461 8 H 0.093 0.907 9 C 0.079 3.921 10 C -0.290 4.290 11 N -0.170 5.170 12 C -0.219 4.219 13 N -0.125 5.125 14 C 0.080 3.920 15 C -0.202 4.202 16 N -0.205 5.205 17 C -0.074 4.074 18 O -0.092 6.092 19 H 0.096 0.904 20 H 0.209 0.791 21 H 0.194 0.806 22 H 0.202 0.798 23 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 6.631 -2.022 -0.474 6.949 hybrid contribution 0.802 1.438 -0.420 1.700 sum 7.434 -0.584 -0.893 7.510 Atomic orbital electron populations 1.69577 1.07464 1.29342 1.34820 1.25759 0.94986 1.01166 0.92790 0.85925 0.79914 0.79305 0.79360 1.19198 1.19749 1.18639 1.18531 0.94250 0.88444 1.44881 0.90701 1.19331 0.93273 0.81759 0.97742 1.23352 0.93429 0.90965 1.21235 1.69507 1.25528 1.07445 1.14509 1.24008 0.80508 0.95271 1.22121 1.42193 0.98570 1.08958 1.62806 1.19463 0.83152 0.97208 0.92196 1.22780 0.88925 1.05537 1.02933 1.70350 1.17071 1.20150 1.12910 1.27708 0.89220 0.93537 0.96952 1.84488 1.18318 1.56778 1.49568 0.90394 0.79118 0.80594 0.79774 0.73564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.87 10.34 55.56 0.57 -19.30 14 2 C 0.07 1.78 5.50 -17.27 -0.09 1.68 14 3 Si 0.93 18.42 29.56 -169.99 -5.03 13.39 14 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 14 7 C -0.43 -11.39 9.10 -38.23 -0.35 -11.74 14 8 H 0.07 1.95 7.59 -52.48 -0.40 1.55 14 9 C 0.19 5.09 6.71 -83.57 -0.56 4.53 14 10 C -0.14 -3.98 10.88 -16.54 -0.18 -4.16 14 11 N -0.45 -12.07 11.17 -13.42 -0.15 -12.22 14 12 C 0.05 1.19 12.45 -89.23 -1.11 0.08 14 13 N -0.43 -10.54 3.01 -61.59 -0.19 -10.72 14 14 C 0.23 4.91 7.24 -15.10 -0.11 4.80 14 15 C -0.06 -1.11 11.86 -17.50 -0.21 -1.32 14 16 N -0.48 -8.20 11.28 -14.74 -0.17 -8.37 14 17 C 0.15 2.34 13.23 52.09 0.69 3.02 14 18 O -0.21 -4.12 10.65 4.57 0.05 -4.07 14 19 H 0.28 6.45 8.30 -40.82 -0.34 6.11 14 20 H 0.19 5.46 5.77 -52.48 -0.30 5.16 14 21 H 0.18 3.46 8.06 -52.49 -0.42 3.03 14 22 H 0.19 3.02 8.06 -52.49 -0.42 2.59 14 23 H 0.25 2.26 8.06 -52.49 -0.42 1.84 14 LS Contribution 220.12 15.07 3.32 3.32 Total: -1.00 -30.54 220.12 -4.61 -35.15 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -1.10 Total: 5.93 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.92 Total: -3.11 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.07 Total: -50.61 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.05 Total: -4.07 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.54 -4.61 -35.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259544618.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.678 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds