Wall clock time and date at job start Mon Mar 30 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48504 * 109.47221 * 270.00568 * 3 2 1 5 5 H 1.48502 * 109.46997 * 30.00196 * 3 2 1 6 6 H 1.48503 * 109.46992 * 150.00563 * 3 2 1 7 7 C 1.40112 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.39964 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.39656 * 127.06123 * 359.97438 * 9 7 2 11 11 N 1.32956 * 107.62133 * 180.02562 * 10 9 7 12 12 C 1.31074 * 110.08710 * 359.71741 * 11 10 9 13 13 N 1.35770 * 109.52672 * 0.45633 * 12 11 10 14 14 C 1.39594 * 126.55742 * 179.82041 * 13 12 11 15 15 C 1.35186 * 126.51798 * 309.68336 * 14 13 12 16 16 N 1.34424 * 107.58047 * 180.02562 * 15 14 13 17 17 C 1.30241 * 108.79584 * 0.02562 * 16 15 14 18 18 O 1.34153 * 108.90783 * 0.26173 * 17 16 15 19 19 H 0.96998 * 119.99857 * 359.97438 * 1 2 3 20 20 H 1.08004 * 126.18299 * 0.05076 * 10 9 7 21 21 H 1.08001 * 125.23974 * 180.27477 * 12 11 10 22 22 H 1.08000 * 126.20324 * 0.04879 * 15 14 13 23 23 H 1.08002 * 125.54255 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4399 2.6526 0.7001 6 1 3.5400 1.4401 0.6999 7 6 2.0089 -1.2134 -0.0005 8 1 3.0889 -1.2135 -0.0010 9 6 1.3091 -2.4255 -0.0005 10 6 -0.0769 -2.5972 0.0005 11 7 -0.3206 -3.9042 0.0006 12 6 0.8070 -4.5724 -0.0063 13 7 1.8498 -3.7029 -0.0011 14 6 3.2064 -4.0316 -0.0022 15 6 3.8245 -4.8997 0.8296 16 7 5.1261 -4.9262 0.4948 17 6 5.3195 -4.1112 -0.5025 18 8 4.1511 -3.5381 -0.8285 19 1 -0.4850 0.8400 0.0004 20 1 -0.8168 -1.8104 0.0006 21 1 0.8934 -5.6489 -0.0119 22 1 3.3571 -5.4690 1.6195 23 1 6.2672 -3.9234 -0.9853 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259544618.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:55 Heat of formation + Delta-G solvation = 62.634548 kcal Electronic energy + Delta-G solvation = -12715.146193 eV Core-core repulsion = 10337.536214 eV Total energy + Delta-G solvation = -2377.609979 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.39661 -41.96968 -35.89296 -35.71600 -34.65394 -31.01938 -29.47030 -26.92434 -24.16301 -23.82069 -21.88391 -21.44317 -20.03412 -18.37599 -17.70583 -17.63355 -16.52595 -15.90175 -15.10533 -14.97844 -14.77917 -14.34791 -13.98502 -13.02098 -12.97574 -12.88442 -12.47147 -12.03432 -11.88543 -11.40776 -11.14981 -10.55583 -9.63883 -9.15465 -8.70433 -6.47544 0.22555 1.02424 1.27161 1.36672 1.52018 1.58124 1.79229 2.14542 2.56049 2.79968 3.19102 3.39642 3.90594 4.18361 4.46950 4.59582 4.88753 4.95898 5.31595 5.44975 5.50493 5.73001 6.29465 6.58207 6.62732 6.76003 6.94676 7.67513 8.26345 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.013518 C = 0.009783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.938757 B = 2070.787347 C = 2861.370984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.030 3.970 3 Si 1.007 2.993 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.459 4.459 8 H 0.073 0.927 9 C 0.160 3.840 10 C -0.180 4.180 11 N -0.485 5.485 12 C 0.074 3.926 13 N -0.434 5.434 14 C 0.172 3.828 15 C -0.031 4.031 16 N -0.496 5.496 17 C 0.191 3.809 18 O -0.228 6.228 19 H 0.294 0.706 20 H 0.175 0.825 21 H 0.219 0.781 22 H 0.203 0.797 23 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.611 -1.552 -0.796 9.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.186 4.186 3 Si 0.826 3.174 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.091 0.909 9 C 0.053 3.947 10 C -0.326 4.326 11 N -0.202 5.202 12 C -0.198 4.198 13 N -0.130 5.130 14 C 0.026 3.974 15 C -0.171 4.171 16 N -0.223 5.223 17 C -0.035 4.035 18 O -0.114 6.114 19 H 0.105 0.895 20 H 0.192 0.808 21 H 0.235 0.765 22 H 0.220 0.780 23 H 0.322 0.678 Dipole moment (debyes) X Y Z Total from point charges 9.078 -2.139 -0.545 9.342 hybrid contribution 0.204 1.286 -0.414 1.367 sum 9.282 -0.853 -0.958 9.370 Atomic orbital electron populations 1.69647 1.08971 1.30835 1.34766 1.26815 0.95827 1.04414 0.91547 0.84830 0.78438 0.74421 0.79735 1.18310 1.18406 1.18329 1.18777 0.94274 0.89275 1.46921 0.90887 1.19597 0.93438 0.83354 0.98317 1.23192 0.93946 0.91482 1.23963 1.69455 1.27183 1.07036 1.16520 1.24841 0.79993 0.96822 1.18120 1.42148 1.00379 1.07945 1.62576 1.19540 0.82500 1.00418 0.94948 1.23123 0.89275 1.03247 1.01494 1.70470 1.16005 1.21609 1.14254 1.29219 0.89366 0.90161 0.94747 1.84479 1.19282 1.57470 1.50133 0.89457 0.80801 0.76462 0.78001 0.67808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.51 10.34 21.86 0.23 -42.28 14 2 C 0.03 1.49 5.50 85.30 0.47 1.96 14 3 Si 1.01 37.43 29.56 68.60 2.03 39.46 14 4 H -0.26 -9.20 7.11 99.48 0.71 -8.50 14 5 H -0.26 -9.04 7.11 99.48 0.71 -8.33 14 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 14 7 C -0.46 -25.05 9.10 23.14 0.21 -24.84 14 8 H 0.07 3.85 7.59 -2.91 -0.02 3.83 14 9 C 0.16 9.09 6.71 38.81 0.26 9.35 14 10 C -0.18 -10.55 10.88 84.87 0.92 -9.63 14 11 N -0.49 -26.40 11.17 -196.36 -2.19 -28.60 14 12 C 0.07 3.50 12.45 179.86 2.24 5.74 14 13 N -0.43 -21.50 3.01 -458.05 -1.38 -22.88 14 14 C 0.17 7.20 7.24 82.75 0.60 7.80 14 15 C -0.03 -1.06 11.86 83.59 0.99 -0.07 14 16 N -0.50 -15.33 11.28 -315.25 -3.56 -18.89 14 17 C 0.19 5.08 13.23 130.48 1.73 6.81 14 18 O -0.23 -8.62 10.65 -6.57 -0.07 -8.69 14 19 H 0.29 13.60 8.30 -92.71 -0.77 12.83 14 20 H 0.18 10.58 5.77 -2.91 -0.02 10.56 14 21 H 0.22 8.07 8.06 -2.91 -0.02 8.05 14 22 H 0.20 6.07 8.06 -2.91 -0.02 6.05 14 23 H 0.31 3.76 8.06 -2.91 -0.02 3.73 14 Total: -1.00 -68.93 220.12 3.72 -65.22 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.24 Total: 19.52 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 7.42 Total: -2.87 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -6.90 Total: -112.64 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.07 Total: -8.69 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -68.93 3.72 -65.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259544618.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.850 kcal (2) G-P(sol) polarization free energy of solvation -68.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds