Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30596 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48502 * 109.46700 * 269.99394 * 3 2 1 5 5 H 1.48498 * 109.47016 * 29.99528 * 3 2 1 6 6 H 1.48501 * 109.46815 * 149.99608 * 3 2 1 7 7 C 1.40406 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.40008 * 120.00522 * 0.02562 * 7 2 1 10 10 C 1.39060 * 126.29385 * 180.26562 * 9 7 2 11 11 C 1.40856 * 107.50089 * 180.14108 * 10 9 7 12 12 C 1.47936 * 125.86777 * 179.86937 * 11 10 9 13 13 C 1.36065 * 126.75996 * 179.74176 * 12 11 10 14 14 N 1.33739 * 107.88022 * 179.73950 * 13 12 11 15 15 C 1.30631 * 109.54697 * 359.97438 * 14 13 12 16 16 N 1.34960 * 108.99546 * 359.97438 * 15 14 13 17 17 H 0.97002 * 126.44900 * 180.02562 * 16 15 14 18 18 N 1.31557 * 108.26080 * 359.60777 * 11 10 9 19 19 O 1.35123 * 126.28557 * 359.97438 * 9 7 2 20 20 H 0.96999 * 120.00014 * 0.02562 * 1 2 3 21 21 H 1.08002 * 126.25439 * 0.02680 * 10 9 7 22 22 H 1.07995 * 126.05729 * 359.73640 * 13 12 11 23 23 H 1.07996 * 125.49921 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.4876 2.0463 -1.4001 5 1 1.4374 2.6527 0.6999 6 1 3.5375 1.4401 0.7001 7 6 2.0079 -1.2160 0.0005 8 1 3.0879 -1.2160 0.0010 9 6 1.3079 -2.4285 0.0005 10 6 1.8670 -3.7018 0.0062 11 6 0.8073 -4.6297 0.0006 12 6 0.9450 -6.1027 0.0011 13 6 -0.0645 -7.0149 0.0007 14 7 0.4842 -8.2345 -0.0045 15 6 1.7861 -8.1281 -0.0078 16 7 2.1200 -6.8204 -0.0054 17 1 3.0185 -6.4551 -0.0073 18 7 -0.3258 -3.9614 0.0006 19 8 -0.0352 -2.5765 0.0005 20 1 -0.4850 0.8400 -0.0004 21 1 2.9212 -3.9364 0.0119 22 1 -1.1215 -6.7933 0.0039 23 1 2.4828 -8.9533 -0.0117 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259544717.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = 59.486937 kcal Electronic energy + Delta-G solvation = -12249.399552 eV Core-core repulsion = 9871.653083 eV Total energy + Delta-G solvation = -2377.746470 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.97018 -41.32811 -35.97119 -34.31048 -33.36388 -31.65282 -29.92510 -27.61037 -24.05916 -22.85113 -21.61592 -21.36910 -19.97764 -18.09171 -17.25459 -16.26291 -16.24698 -15.60808 -15.33472 -15.09894 -14.50216 -14.35439 -13.88982 -13.21079 -13.07287 -12.72457 -11.99204 -11.88728 -11.57737 -11.36311 -11.10698 -11.00643 -9.77555 -9.30138 -8.97431 -7.00476 0.36605 1.08558 1.37121 1.57460 1.66869 1.95323 1.99181 2.10658 2.39807 2.82140 3.03399 3.67580 3.93128 4.20092 4.52363 4.52978 4.86915 5.00756 5.09032 5.24564 5.53243 5.65698 5.99154 6.30535 6.37797 6.49497 6.95089 7.18848 8.02813 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.092416 B = 0.007356 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 302.906156 B = 3805.575107 C = 4098.633975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.018 3.982 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.242 1.242 7 C -0.440 4.440 8 H 0.128 0.872 9 C 0.197 3.803 10 C -0.472 4.472 11 C 0.177 3.823 12 C 0.022 3.978 13 C 0.003 3.997 14 N -0.529 5.529 15 C 0.222 3.778 16 N -0.544 5.544 17 H 0.437 0.563 18 N -0.456 5.456 19 O -0.112 6.112 20 H 0.304 0.696 21 H 0.140 0.860 22 H 0.165 0.835 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.754 -4.166 -0.015 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.204 4.204 3 Si 0.835 3.165 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.165 1.165 7 C -0.469 4.469 8 H 0.146 0.854 9 C 0.138 3.862 10 C -0.502 4.502 11 C 0.017 3.983 12 C -0.094 4.094 13 C -0.148 4.148 14 N -0.249 5.249 15 C -0.062 4.062 16 N -0.149 5.149 17 H 0.278 0.722 18 N -0.217 5.217 19 O -0.117 6.117 20 H 0.116 0.884 21 H 0.158 0.842 22 H 0.182 0.818 23 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 6.708 -4.837 -0.012 8.270 hybrid contribution 1.480 1.591 -0.010 2.173 sum 8.187 -3.246 -0.022 8.808 Atomic orbital electron populations 1.69779 1.10089 1.32841 1.28646 1.27610 0.95853 1.06571 0.90356 0.84658 0.78834 0.72752 0.80255 1.17783 1.18768 1.16512 1.19708 0.96267 0.87822 1.43137 0.85385 1.20763 0.82680 0.95727 0.87000 1.21973 0.98738 0.89418 1.40115 1.20256 0.93086 0.91136 0.93846 1.18388 0.88098 0.88329 1.14610 1.22419 0.99197 0.87919 1.05231 1.70196 1.07960 1.24623 1.22085 1.26138 0.93705 0.85736 1.00615 1.43135 1.08616 1.07557 1.55615 0.72204 1.80223 1.18381 0.85265 1.37792 1.89304 1.21967 1.20171 1.80283 0.88436 0.84244 0.81785 0.71408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.22 12.02 21.91 0.26 -40.95 14 2 C 0.02 0.85 5.50 85.40 0.47 1.32 14 3 Si 1.02 33.79 29.56 68.60 2.03 35.82 14 4 H -0.25 -8.02 7.11 99.48 0.71 -7.31 14 5 H -0.26 -8.36 7.11 99.48 0.71 -7.65 14 6 H -0.24 -7.45 7.11 99.48 0.71 -6.74 14 7 C -0.44 -22.46 9.35 23.23 0.22 -22.25 14 8 H 0.13 5.76 7.85 -2.91 -0.02 5.73 14 9 C 0.20 11.20 6.87 22.90 0.16 11.36 14 10 C -0.47 -24.01 10.82 23.11 0.25 -23.76 14 11 C 0.18 8.96 7.09 42.40 0.30 9.26 14 12 C 0.02 0.90 7.12 40.29 0.29 1.19 14 13 C 0.00 0.13 11.82 83.90 0.99 1.13 14 14 N -0.53 -17.70 11.22 -199.53 -2.24 -19.94 14 15 C 0.22 5.36 13.02 180.25 2.35 7.71 14 16 N -0.54 -15.50 6.19 -187.55 -1.16 -16.66 14 17 H 0.44 9.64 8.96 -92.71 -0.83 8.81 14 18 N -0.46 -26.37 12.93 -48.55 -0.63 -26.99 14 19 O -0.11 -6.98 10.46 26.39 0.28 -6.70 14 20 H 0.30 13.92 8.29 -92.71 -0.77 13.15 14 21 H 0.14 6.07 8.06 -2.91 -0.02 6.04 14 22 H 0.16 6.56 8.06 -2.91 -0.02 6.54 14 23 H 0.27 2.85 8.06 -2.91 -0.02 2.83 14 Total: -1.00 -72.07 224.57 3.99 -68.08 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.43 Total: 21.39 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 5.02 Total: -14.05 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -3.76 Total: -104.55 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: 0.28 Total: -6.70 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 2.03 Total: 35.82 kcal Total: -72.07 3.99 -68.08 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259544717.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.571 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds